PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g05410.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 311aa    MW: 33238 Da    PI: 6.5052
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g05410.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY86.72.1e-27118178158
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                   +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC ++k+v+r++edp++++++Y g+H++
  Zjn_sc00039.1.g05410.1.sm.mk 118 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRhsqGCAATKQVQRTDEDPNLFDVIYLGTHTC 178
                                   59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.964113176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.6E-27113179IPR003657WRKY domain
SuperFamilySSF1182902.75E-25115178IPR003657WRKY domain
SMARTSM007748.0E-39118180IPR003657WRKY domain
PfamPF031061.3E-26119178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDGGVHCGGG SRHVVTELGH IKELVTQLEV HLAESPDLCK HLASQIFSLA ERSIGIITSS  60
DFKKRSAADA GLASAATPSL LSDAVDAPFK TNKRRKMMEK SKHQVRVSPG NGEAITPVDD  120
GHSWRKYGQK EILGAKHPRG YYRCTHRHSQ GCAATKQVQR TDEDPNLFDV IYLGTHTCVH  180
NKTAAVTAGG QAAQPPTERN PEAHALLQNL SANLTVNTEG LAAAGEPQGW GAATATPLCF  240
SSTSVNNWGV SPATSDSNRV SPFHPFEAAD WRAQSELQEV VSALVAAGAP STPAFDMDED  300
FVDIDISSFF V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-23111178168OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800891.11e-115probable WRKY transcription factor 30
TrEMBLA0A1D8F0I21e-116A0A1D8F0I2_9POAL; WRKY74-1 protein
STRINGPavir.Ba02545.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-35WRKY family protein