PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00039.1.g04130.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 596aa MW: 62496.3 Da PI: 8.61 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.3 | 1.7e-28 | 249 | 298 | 2 | 51 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ Zjn_sc00039.1.g04130.1.am.mk 249 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 298 9************************************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.66E-13 | 246 | 299 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.8E-25 | 247 | 298 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.2E-21 | 249 | 299 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.2E-5 | 250 | 298 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 596 aa Download sequence Send to blast |
MEASSAASPD LSLHISLPST GPSGGRAVAG GAGGGAGGDP WRRLNGSTAS TELSLSPPAE 60 PDADALPWRH RPSAVASSSA ATTSSALMHV PMLQPLDDGG GAAGGGVDVS AAPPIRGIPI 120 YNGPGGFPFL PSAPGGDGHQ KVGFYGSYHH PATWPSSLGS TTPSPLAPGA SSFDPASAFL 180 SPAAHHHHRM LSASGRFNGM LTDTLRGYGA GGMGGIGGHH HHHLHGAQPF GLGSRFMPKF 240 PAKRSMRAPR MRWTSTLHAR FVHAVELLGG HERATPKSVL ELMDVKDLTL AHVKSHLQLL 300 PFLLLFGSDK NANAVTPELV NDGETDGWGL AAKKLPLLWG REREREREVH GVGMSSVCVR 360 AHGPKLQNHG QRERREREGK GIAATGGREG PRRGHGIMVF PSVHFLVFLA LIHLLVIRPL 420 VSSPPRGPAE GGSGDDEFSG ASQAASGGDN MCVRPFGEHR STSEGAASSV GGCGGDMDQS 480 SAGNTNIRWS NSSSSQVSNH EQSSPSLEFT LGRPDWQACT CRSVASTAKR LIVLVACVMR 540 EIARALLWTT GQPLSLVPAG PWGWLGMGLD LELELDDRAR CQGSPTRSRC PTEREK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 7e-14 | 250 | 298 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 7e-14 | 250 | 298 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 7e-14 | 250 | 298 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 7e-14 | 250 | 298 | 3 | 51 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU925398 | 1e-108 | EU925398.1 Zea mays milkweed pod1 (mwp1) mRNA, complete cds. | |||
GenBank | EU954667 | 1e-108 | EU954667.1 Zea mays clone 1476543 myb-like DNA-binding domain, SHAQKYF class family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001353566.1 | 1e-116 | uncharacterized protein LOC100280930 isoform 1 | ||||
Swissprot | Q0J235 | 4e-83 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A1D6I3X2 | 1e-115 | A0A1D6I3X2_MAIZE; Milkweed pod1 | ||||
STRING | GRMZM2G082264_P01 | 1e-115 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32240.1 | 4e-34 | G2-like family protein |