PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00039.1.g03650.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 334aa MW: 35366.5 Da PI: 5.7827

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00039.1.g03650.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.3	6.3e-14	111	157	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+ErrRR+riN +++Lr+llP+ +K +Ka+ L ++ +++k+L Zjn_sc00039.1.g03650.1.am.mk 111 RSHSEAERRRRQRINGHLAKLRSLLPNT-----TKTDKASLLAEVLDHVKEL 157 78***********************9.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.609	108	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.94E-13	111	160	No hit	No description
Pfam	PF00010	2.4E-11	111	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.3E-14	112	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-14	112	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-13	114	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	2.1E-5	209	256	No hit	No description
SuperFamily	SSF55021	9.61E-5	209	256	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MWDGGVEHGS QEAAHHQLLG PWLGATPFPE PTTVGAFDAA NAGYACDVFG GLGLGHGGVF 60 GFGFDAVQQQ RAADQGSGKA VVSGLLGSLQ AELGRMTPRE MMDAKALAAS RSHSEAERRR 120 RQRINGHLAK LRSLLPNTTK TDKASLLAEV LDHVKELKRQ TSAMMVAATT IPGGEDEAAG 180 PAQMLPTEAD ELAVDSAVGG DGRLVMRASL CCEDRPDLIP DIVRALAALR MRARRAEITT 240 LGGRVRSVLL ITADEGAGGH GDGEDDDCRP NALHDDDDER TASHRRHECI ASVQEALRGV 300 VDRRAASSDT SSSGGDGSTK RQRMNYAAQE QCLV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001347905.1	1e-132	uncharacterized protein LOC100279487
Refseq	XP_002462365.1	1e-132	transcription factor bHLH30
TrEMBL	A0A1D6EPT7	1e-130	A0A1D6EPT7_MAIZE; Transcription factor AIG1
TrEMBL	A0A3L6G0U5	1e-130	A0A3L6G0U5_MAIZE; Transcription factor bHLH30
TrEMBL	C5XC82	1e-130	C5XC82_SORBI; Uncharacterized protein
STRING	Sb02g024460.1	1e-131	(Sorghum bicolor)
STRING	GRMZM2G176141_P01	1e-131	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1918	38	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-48	bHLH family protein