PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g03110.1.am.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 303aa    MW: 33127.2 Da    PI: 6.9584
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g03110.1.am.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.91.1e-29151210159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     ++Dgy+WrKYGqK+ ++++ pr+Y+rC+++ +Cpvkkkv+rsaed +v++ tYegeHnh+
  Zjn_sc00039.1.g03110.1.am.mkhc 151 VKDGYQWRKYGQKVTRDNPSPRAYFRCAFSsSCPVKKKVQRSAEDSSVLVATYEGEHNHP 210
                                     58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182904.32E-25149212IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.2E-28150212IPR003657WRKY domain
SMARTSM007744.4E-34151211IPR003657WRKY domain
PfamPF031061.7E-24152210IPR003657WRKY domain
PROSITE profilePS5081127.473153212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009617Biological Processresponse to bacterium
GO:0009620Biological Processresponse to fungus
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MLLMDSARHA SHSPLCLDLS VGLPSMPPPR RNTEIEADNE PDRPATAITD EEARTLEAKF  60
NQVSEANRRL TEMIIYLCDS HIARPDSPSP VAGKKRGRES PELSNSCDGG NTNRKCTEST  120
PVIVSDGASC KQIKVSRVCT QIDPSDPTLT VKDGYQWRKY GQKVTRDNPS PRAYFRCAFS  180
SSCPVKKKVQ RSAEDSSVLV ATYEGEHNHP SPTMRAEELP SCATRTGSVP CSISFNSSGP  240
NITLDVDKNG ARTPEPDLKK LCREIASPEF RTALVEQMAS ALTRDSNFTG ALAAAILQQL  300
PEY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-191512121474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Regulates, probably indirectly, the activation of defense-related genes during defense response (By similarity). Modulates plant innate immunity against X.oryzae pv. oryzae (Xoo) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by biotic elicitors (e.g. fungal chitin oligosaccharide) (By similarity). Induced by pathogen infection (e.g. M.grisea and X.oryzae pv. oryzae (Xoo)) (PubMed:16528562). Accumulates after treatment with benzothiadiazole (BTH) and salicylic acid (SA) (By similarity). {ECO:0000250|UniProtKB:Q6EPZ2, ECO:0000269|PubMed:16528562}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956831.11e-130WRKY transcription factor WRKY76
SwissprotQ6IEK51e-118WRK76_ORYSI; WRKY transcription factor WRKY76
TrEMBLA0A0A9SU371e-143A0A0A9SU37_ARUDO; WRKY
STRINGSi030429m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66603552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.13e-56WRKY DNA-binding protein 40