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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00039.1.g02790.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | AP2 | ||||||||
Protein Properties | Length: 391aa MW: 42685.5 Da PI: 6.9695 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.3 | 3.2e-12 | 46 | 102 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d s+n ++k+ g ++ ++ Aa+a++ a++k++g Zjn_sc00039.1.g02790.1.sm.mk 46 SIYRGVTRHRWTGRFEAHLWDkNSWNEtQNKKGKQGAYDDEDAAARAYDLAALKYWG 102 57*******************8888889785555599***99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.7E-8 | 46 | 102 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.75E-15 | 46 | 112 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.5E-20 | 47 | 116 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.8E-12 | 47 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.834 | 47 | 110 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-6 | 48 | 59 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.509 | 128 | 208 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.3E-8 | 135 | 214 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-5 | 139 | 209 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-5 | 183 | 210 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.7E-6 | 190 | 210 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MAKPRKNSAA AAANSNSTAA GDVGVRVKPK RTRKSVPREA PSQRSSIYRG VTRHRWTGRF 60 EAHLWDKNSW NETQNKKGKQ GAYDDEDAAA RAYDLAALKY WGPDTILNFP ASVYEEELKE 120 MEGQSREEYI GSLRRHHHNG RWEARIGRFD LSEVDTGIPI DSSTKRPKSK GIPVQRRNVR 180 AATQEEAAMA YDMAAIEYRG LNAVTNFDLS RYIKWLRPGA DSVAAAAAQN PHPMLGGLVQ 240 ELTPVDIDGV AFQHDHHRNQ GTEAHFPLPL KTSLGHTPTT SALSLLLQSP KFKEMIALTT 300 AAESSTTSSS SPPTPSPPRP SPSPPPLQAQ VTNDGSDASP QCSFPDDIQT FFGCEDVAGV 360 GVGVGYTDVD GLFFGDLAAY ASPAFHFELD L |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT039632 | 1e-122 | BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds. | |||
GenBank | BT055111 | 1e-122 | BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds. | |||
GenBank | KJ727588 | 1e-122 | KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015696557.1 | 1e-165 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A0D9XDW0 | 1e-164 | A0A0D9XDW0_9ORYZ; Uncharacterized protein | ||||
STRING | OB09G17420.1 | 1e-164 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3319 | 36 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 2e-60 | ARIA-interacting double AP2 domain protein |