PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00039.1.g00740.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ZF-HD

Protein Properties

Length: 299aa MW: 31909.7 Da PI: 9.8561

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00039.1.g00740.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	97.8	8.5e-31	63	115	5	58
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 rY+eClkNhA +GghavDGCgEfm++ geegt +al+CaAC+CHRnFHR+e+ Zjn_sc00039.1.g00740.1.am.mk 63 RYRECLKNHALGIGGHAVDGCGEFMAA-GEEGTLDALRCAACNCHRNFHRKESP 115 8***********************9.999******************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	9.0E-30	46	116	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	9.3E-29	63	114	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.6E-29	63	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.647	64	113	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	1.24E-20	201	270	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.9E-33	206	271	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.1E-26	209	265	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MRARSKNAIS RPAACPVEPS TPAARETRQG GRQASSGFGG GVAPAKPPSE PGSRAKAPGG 60 GGRYRECLKN HALGIGGHAV DGCGEFMAAG EEGTLDALRC AACNCHRNFH RKESPTAEGS 120 PVSPAAIVAY GATPHQQFSP FYRTPADYFH HQPHYMAPRP LALPSTSHSG RDDGDDLSRM 180 AGHVSALGPM SGMSLGAGPF GSGGFGSGKK RFRTKFTQEQ KDRMQAFAER VGWRIQKHDE 240 AAVQQFCDEV GVKRHVLKVW MHNNKHTLGK KPQHVAHPDP DPHCAHAPLN NAHAPSQSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-26	210	267	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004957068.1	1e-127	zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	1e-124	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A368Q1X3	1e-126	A0A368Q1X3_SETIT; Uncharacterized protein
STRING	Si032496m	1e-124	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	2e-60	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]