PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00039.1.g00610.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 242aa    MW: 26784.4 Da    PI: 10.3107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00039.1.g00610.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.12e-1562113155
                                   CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                   +r++h ++Er+RR+++N+ ++ Lr+l+P+a   ++++ s a+i+  A++++k+L+
  Zjn_sc00039.1.g00610.1.am.mk  62 QRMTHIAVERNRRKQMNEYLSALRSLMPPA---YAQRGSQASIVGGAINFVKELE 113
                                   79****************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.2E-1460116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1760125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.04E-1360117No hitNo description
PROSITE profilePS5088816.02561112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-1262113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-967118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSPSIRSPFP MTTPPLPPAT RPNYSLITPK HTLPAVAPSP QSERRKRRRI MPVKNKEETE  60
SQRMTHIAVE RNRRKQMNEY LSALRSLMPP AYAQRGSQAS IVGGAINFVK ELEQPLQSLE  120
AKKWARQRPA DGNDGDAAAF ANFFNFRTTT ASPHNQRSLV EALGRGRGRG NHAGEPRQPS  180
DTVPATGRLT VLHLNMTSSG NMVLYSFSLK VEDDCQLTCL DDIATAAHQI LEKIEEQGCS  240
LG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14448RKRRR
24549KRRRI
36273RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0560417e-62BT056041.1 Zea mays full-length cDNA clone ZM_BFc0157N10 mRNA, complete cds.
GenBankEU9519707e-62EU951970.1 Zea mays clone 1064081 DNA binding protein mRNA, complete cds.
GenBankKJ7280357e-62KJ728035.1 Zea mays clone pUT6179 bHLH transcription factor (bHLH105) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460373.15e-66transcription factor bHLH94
SwissprotQ9C7T44e-49BH096_ARATH; Transcription factor bHLH96
TrEMBLC5X3141e-64C5X314_SORBI; Uncharacterized protein
STRINGSb02g027210.12e-65(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4501033
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-46bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]