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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zjn_sc00039.1.g00470.1.am.mkhc |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
HD-ZIP |
Protein Properties |
Length: 267aa MW: 29104.1 Da PI: 4.5118 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zjn_sc00039.1.g00470.1.am.mkhc | genome | ZGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 45 | 98 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k
Zjn_sc00039.1.g00470.1.am.mkhc 45 KKRRLSTEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 98
45689************************************************9 PP
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2 | HD-ZIP_I/II | 135.1 | 2.4e-43 | 45 | 136 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80
kkrrls+eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++yd+l++++++L
Zjn_sc00039.1.g00470.1.am.mkhc 45 KKRRLSTEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRHSYDTLRHDHDAL 123
9****************************************************************************** PP
HD-ZIP_I/II 81 ekeveeLreelke 93
++++++L +e+ke
Zjn_sc00039.1.g00470.1.am.mkhc 124 RRDKDALLAEIKE 136
********99987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009637 | Biological Process | response to blue light |
GO:0030308 | Biological Process | negative regulation of cell growth |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0048573 | Biological Process | photoperiodism, flowering |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 267 aa
Download sequence Send
to blast |
MKRSRGGSPS LLSMTNPDDD GYDGVGMEAE GDAEEEMVVC GGGGKKRRLS TEQVRALERS 60 FEVENKLEPE RKARLARDLG LQPRQVAVWF QNRRARWKTK QLERDYAALR HSYDTLRHDH 120 DALRRDKDAL LAEIKELKAK LGDEEAAASF TSVKAEPATS DGPPPTGAGS SESDSSAVLN 180 DADQAGATPP TEAPVPEIQP GTLVGTATAL AGTAPARQGE VFFHGSFLKA EEDETGFLDD 240 DEPCGGFFAV EQPPPMAWWT EPIEHWN
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 69 | 75 | ERKARLA |
2 | 92 | 100 | RRARWKTKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT034257 | 1e-170 | BT034257.1 Zea mays full-length cDNA clone ZM_BFc0009H14 mRNA, complete cds. |
GenBank | BT039062 | 1e-170 | BT039062.1 Zea mays full-length cDNA clone ZM_BFb0367N11 mRNA, complete cds. |
GenBank | BT055374 | 1e-170 | BT055374.1 Zea mays full-length cDNA clone ZM_BFb0091J03 mRNA, complete cds. |
GenBank | EU948246 | 1e-170 | EU948246.1 Zea mays clone 371798 mRNA sequence. |
GenBank | JX469929 | 1e-170 | JX469929.1 Zea mays subsp. mays clone UT3187 HB-type transcription factor mRNA, partial cds. |