PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00038.1.g03660.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 357aa    MW: 38224.3 Da    PI: 10.5678
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00038.1.g03660.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.71.7e-31291348359
                                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                     D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh 
  Zjn_sc00038.1.g03660.1.sm.mkhc 291 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPTMLIVTYEGEHNHA 348
                                     9*************************988****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.3E-17241287IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.6E-34277350IPR003657WRKY domain
PROSITE profilePS5081131.491284350IPR003657WRKY domain
SuperFamilySSF1182901.83E-27287350IPR003657WRKY domain
SMARTSM007744.8E-38289349IPR003657WRKY domain
PfamPF031064.4E-27291347IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEAVEVANRA AVESCHRVLA LLSQSEQQDP ALRRSVASET GEACAKLRKV VALLGDTGGS  60
GHARGRFSRR GGPTGFLSQK GFLGSGGGAS LETTPSGSAT APSNSYAQLR ARINAASEYS  120
RGLDVASTSG SPHFGAPKLV QPLSVQFQIG NVAHRYPFPQ QPSARQKLQA EMFKRSNSGI  180
SVKFDSPCPS GATAMMTSSA RSFMSSLSMD GSVVSLEGKR PFHLVGAPAA SDSVDMQREP  240
KRRCVGKGGE DGRGKCAVTG RCHCSKRRKL RNKRSIKVPA ISNKIADIPP DEYSWRKYGQ  300
KPIKGSPHPR GYYKCSSVRG CPARKHVERC VDDPTMLIVT YEGEHNHARP PAQSAQT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-21277352276WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809630.10.0protein WRKY1-like isoform X1
TrEMBLA0A2T7EIW20.0A0A2T7EIW2_9POAL; Uncharacterized protein
STRINGPavir.J38176.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28593887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.18e-72WRKY DNA-binding protein 39