PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00038.1.g01060.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 663aa    MW: 70126.8 Da    PI: 6.5619
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00038.1.g01060.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06303324526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   +C+ f ++  C++Gd C +aHg
  Zjn_sc00038.1.g01060.1.am.mk 303 PCPEFKKGAGCRRGDMCEYAHG 324
                                   8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.93E-9134217IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.6E-10135222IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.222137208IPR020683Ankyrin repeat-containing domain
PfamPF000230.017139168IPR002110Ankyrin repeat
PROSITE profilePS500889.538173208IPR002110Ankyrin repeat
SMARTSM003569.8E-4298325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4302326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258303326IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.371334358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MRYEIAATAI VPLLSPGLAT RASGMSWGLP DSTPRASLLE PARAARALAR GHPRAVRCGS  60
REGDLLLPAS LSAVSSNTFP DRTAPAMAET SDAAAVSARL LELAADDDAV ALGSLLAAHP  120
SLADEPAPWY SPARGAEPMT PLMVAAAYGS VSCIDVLLSP PFLADPNHAS PSSLSTALHL  180
AAAGGASSAP AAVSRLLAAG ADSTLLDQLH RRPSDLVSLP HNSLPLKNHL LSLLGARKEW  240
PPDPSLPDIK NGAYASDDFR MYSFKVRACS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS  300
CVPCPEFKKG AGCRRGDMCE YAHGVFESWL HPAQYRTRLC KDGVGCARRV CFFAHTAEEL  360
RPLYVSRDSS FTPPLSPSGA GNGVTGGWPQ PSLPALCLPG SAGSLHLSRL RTSLSARSMT  420
MDEMLATADY DGLGSPASVR SARGTTLVPS NLDDLFSAEV ASAAASRSPR YADQGGATFS  480
PTRKAAMLNQ FQQQQSLLSP RATAAGVNPE PVSPMSSRLL AALTQREKMQ QQTFRSMSSR  540
DLGSGASILV GSPVGSSWSK WGISSGSGTQ DWGANDEELG RLKRSSSFEL QGGANGDEPD  600
LSWVSTLVKE PTPEKASNNG SVAMESINIL GQAATHDGIN DEEDTAGVIG SWLEQLQLDE  660
MVV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14250RAARALARG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147048.20.0nucleic acid binding protein
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLC0HDR90.0C0HDR9_MAIZE; Zinc finger CCCH domain-containing protein 30
STRINGGRMZM2G027298_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-126CCCH-type zinc finger protein with ARM repeat domain