PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00038.1.g00780.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 485aa MW: 53304 Da PI: 10.7919

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00038.1.g00780.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	56.9	2.7e-18	333	376	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i++k + qvtfskR+ g++KKA+E+ Cda+vav+ifs gk Zjn_sc00038.1.g00780.1.am.mk 333 PIQDKGRSQVTFSKRKSGLFKKASEIVLRCDAKVAVVIFSRAGK 376 699**************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	21.614	324	384	IPR002100	Transcription factor, MADS-box
SMART	SM00432	7.5E-20	324	383	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	9.81E-19	325	392	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-12	326	346	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.1E-18	334	378	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-12	346	361	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.1E-12	361	382	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MEKERIKIAM LRQEQMFRQQ VQELHRVYRV QKQLMMQMQL TEMKHHSQAS ADAQARSTMK 60 MGCQHWCNKS GAKKAALEDF YLELTLGTGV GKQERATNSD SEATVSVDIC RIRTMGPVCG 120 RLKSVVRGEV SRTWEVRSAA VKMAAAAEVP PDEAGTRSSP YRANPLARRH EGGGRDARVC 180 PQGGRRGDGN GGLEQLRQRD PLPRGDRQFR CCRGGHVTPA AHAAVAEPPI AARPRRGFQC 240 EGHRRWRGGD CKLQKGKAVY EKENDEAHAR LPPPSARELA AAKSAIAPAN SHRLPNSCRS 300 PSRRRAVASE VDPPEPSTMR KASKGRQVIT IAPIQDKGRS QVTFSKRKSG LFKKASEIVL 360 RCDAKVAVVI FSRAGKPYAL GTPSVDAVLA PLPEHGGFPA PSLPPVPDRA AVEATVRQLE 420 DTKALVAAEQ LRMQAVGERV MQAAAGRGSW WQADVEKLGA AELPEFARAL QQLRHNVQRH 480 IDTKQ

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MEKERIKIAM LRQEQMFRQQ VQELHRVYRV QKQLMMQMQL TEMKHHSQAS ADAQARSTMK  60
MGCQHWCNKS GAKKAALEDF YLELTLGTGV GKQERATNSD SEATVSVDIC RIRTMGPVCG  120
RLKSVVRGEV SRTWEVRSAA VKMAAAAEVP PDEAGTRSSP YRANPLARRH EGGGRDARVC  180
PQGGRRGDGN GGLEQLRQRD PLPRGDRQFR CCRGGHVTPA AHAAVAEPPI AARPRRGFQC  240
EGHRRWRGGD CKLQKGKAVY EKENDEAHAR LPPPSARELA AAKSAIAPAN SHRLPNSCRS  300
PSRRRAVASE VDPPEPSTMR KASKGRQVIT IAPIQDKGRS QVTFSKRKSG LFKKASEIVL  360
RCDAKVAVVI FSRAGKPYAL GTPSVDAVLA PLPEHGGFPA PSLPPVPDRA AVEATVRQLE  420
DTKALVAAEQ LRMQAVGERV MQAAAGRGSW WQADVEKLGA AELPEFARAL QQLRHNVQRH  480
IDTKQ

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2833	30	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	4e-22	AGAMOUS-like 62