PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00037.1.g04510.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HD-ZIP

Protein Properties

Length: 389aa MW: 42822.1 Da PI: 10.9001

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00037.1.g04510.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.8	3.9e-18	271	325	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+ q Le+ F+ ++ +++++++eLA++ gL+ rqV+vWFqNrRa+ k Zjn_sc00037.1.g04510.1.am.mk 271 RKKLRLTSAQAALLEDSFRAHNILTHAQKQELARRAGLSARQVQVWFQNRRARTK 325 788899***********************************************98 PP
2	HD-ZIP_I/II	102.6	3.2e-33	271	359	1	89
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rl++ q++lLE+sF++++ L++ +K+elar+ gl++rqv+vWFqnrRARtk+k++E+d++ L+r+ d+l++enerL+ Zjn_sc00037.1.g04510.1.am.mk 271 RKKLRLTSAQAALLEDSFRAHNILTHAQKQELARRAGLSARQVQVWFQNRRARTKLKKTEVDCKLLRRWRDRLTDENERLR 351 69***************************************************************************** PP HD-ZIP_I/II 82 keveeLre 89 ++ +eLr+ Zjn_sc00037.1.g04510.1.am.mk 352 RDLDELRA 359 ****94 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.1E-17	252	325	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.038	267	327	IPR001356	Homeobox domain
SuperFamily	SSF46689	7.1E-18	269	334	IPR009057	Homeodomain-like
SMART	SM00389	4.2E-15	269	331	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-15	271	325	IPR001356	Homeobox domain
CDD	cd00086	2.24E-13	271	328	No hit	No description
PRINTS	PR00031	1.5E-5	298	307	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	302	325	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.5E-5	307	323	IPR000047	Helix-turn-helix motif
SMART	SM00340	9.3E-13	327	370	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MSRLACRVNG DGGKSQPLIN SYRQGSCVHT TCSFRTRGVT YARNGFRATE SSRRKSHGAS 60 VSSAVTKPLL IDRTTADRGR LEAASSDDPT YQAHTRSSVA RGMPPYKTRP SQHKAPQDLK 120 LSSSRLRDHW PPRLRGLFQF ADRSTAMSSL TTAGSRSSME ECSAEFDTRL SLEIGETSRA 180 TPPPQSLRLF GELIISPQEQ DHGGDGSLGH RETTRAPVAG RKRRAECGGV ASGDIDAAGG 240 GRQNKKAIRT LQSSEEDNGD RQRIPSDGGS RKKLRLTSAQ AALLEDSFRA HNILTHAQKQ 300 ELARRAGLSA RQVQVWFQNR RARTKLKKTE VDCKLLRRWR DRLTDENERL RRDLDELRAV 360 SAARLPAAAV SVVCPYCCDK MVAVAGDVA

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MSRLACRVNG DGGKSQPLIN SYRQGSCVHT TCSFRTRGVT YARNGFRATE SSRRKSHGAS  60
VSSAVTKPLL IDRTTADRGR LEAASSDDPT YQAHTRSSVA RGMPPYKTRP SQHKAPQDLK  120
LSSSRLRDHW PPRLRGLFQF ADRSTAMSSL TTAGSRSSME ECSAEFDTRL SLEIGETSRA  180
TPPPQSLRLF GELIISPQEQ DHGGDGSLGH RETTRAPVAG RKRRAECGGV ASGDIDAAGG  240
GRQNKKAIRT LQSSEEDNGD RQRIPSDGGS RKKLRLTSAQ AALLEDSFRA HNILTHAQKQ  300
ELARRAGLSA RQVQVWFQNR RARTKLKKTE VDCKLLRRWR DRLTDENERL RRDLDELRAV  360
SAARLPAAAV SVVCPYCCDK MVAVAGDVA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	275	SRKKLRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004951890.1	2e-63	putative homeobox-leucine zipper protein HOX26
Swissprot	Q67UX6	2e-42	HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBL	A0A1E5UWC5	2e-65	A0A1E5UWC5_9POAL; Putative homeobox-leucine zipper protein HOX26
STRING	Pavir.Aa03244.1.p	2e-66	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8315	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17460.1	4e-26	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein