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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zjn_sc00037.1.g04510.1.am.mk |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
HD-ZIP |
Protein Properties |
Length: 389aa MW: 42822.1 Da PI: 10.9001 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zjn_sc00037.1.g04510.1.am.mk | genome | ZGD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 56.8 | 3.9e-18 | 271 | 325 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++t+ q Le+ F+ ++ +++++++eLA++ gL+ rqV+vWFqNrRa+ k
Zjn_sc00037.1.g04510.1.am.mk 271 RKKLRLTSAQAALLEDSFRAHNILTHAQKQELARRAGLSARQVQVWFQNRRARTK 325
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 102.6 | 3.2e-33 | 271 | 359 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81
+kk+rl++ q++lLE+sF++++ L++ +K+elar+ gl++rqv+vWFqnrRARtk+k++E+d++ L+r+ d+l++enerL+
Zjn_sc00037.1.g04510.1.am.mk 271 RKKLRLTSAQAALLEDSFRAHNILTHAQKQELARRAGLSARQVQVWFQNRRARTKLKKTEVDCKLLRRWRDRLTDENERLR 351
69******************************************************************************* PP
HD-ZIP_I/II 82 keveeLre 89
++ +eLr+
Zjn_sc00037.1.g04510.1.am.mk 352 RDLDELRA 359
******94 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 389 aa
Download sequence Send
to blast |
MSRLACRVNG DGGKSQPLIN SYRQGSCVHT TCSFRTRGVT YARNGFRATE SSRRKSHGAS 60 VSSAVTKPLL IDRTTADRGR LEAASSDDPT YQAHTRSSVA RGMPPYKTRP SQHKAPQDLK 120 LSSSRLRDHW PPRLRGLFQF ADRSTAMSSL TTAGSRSSME ECSAEFDTRL SLEIGETSRA 180 TPPPQSLRLF GELIISPQEQ DHGGDGSLGH RETTRAPVAG RKRRAECGGV ASGDIDAAGG 240 GRQNKKAIRT LQSSEEDNGD RQRIPSDGGS RKKLRLTSAQ AALLEDSFRA HNILTHAQKQ 300 ELARRAGLSA RQVQVWFQNR RARTKLKKTE VDCKLLRRWR DRLTDENERL RRDLDELRAV 360 SAARLPAAAV SVVCPYCCDK MVAVAGDVA
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G17460.1 | 4e-26 | Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein |