PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00037.1.g04110.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 417aa MW: 46891.6 Da PI: 5.9043

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00037.1.g04110.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.3	9.9e-07	11	34	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C ++r G C++ d+C+FaHg Zjn_sc00037.1.g04110.1.sm.mkhc 11 YKTKMCALWQR-GGCSR-DTCSFAHG 34 9********.*.*****8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	8.8E-12	5	40	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.67E-5	9	39	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	11.554	10	36	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 417 aa Download sequence Send to blast
MLGPPRRGPA YKTKMCALWQ RGGCSRDTCS FAHGSTELRR FPGSRTSFPP RLGVVTSETD 60 LIGDARLVGC IPLTEIPGVI VPFVTEDQLL KKGNLAIHVH PVGGGIERRH EKKPDDGETN 120 SSRSLSVSDN NDDRKDKLSS GDNKEDHEKQ LKGIREDMEI LREDKSHLEI ILEAKNVEVR 180 KFFSRINDLD LQLKKEKEEC HRMTSKMKKF IKAHGRLLKA QEELKRSQAR FERLGDLLAS 240 DILKRGANEE GSSINVDEDP YGYERSLNAA APRKRSSEEA KAVKKRREPD SDTISRPDKY 300 RSEGTVAELD KQNKGSETIK SSYLKKKLWE DEKDKLGNDV SSAKTDKVKD SPVYVLPSTG 360 MAAHAMDDPI EAVELENRHE QMDASLENDA DEETRLPIMP PCSLPPYEGD DEEVDVD

Sequence ? help Back to Top

Protein Sequence Length: 417 aa Download sequence Send to blast

MLGPPRRGPA YKTKMCALWQ RGGCSRDTCS FAHGSTELRR FPGSRTSFPP RLGVVTSETD  60
LIGDARLVGC IPLTEIPGVI VPFVTEDQLL KKGNLAIHVH PVGGGIERRH EKKPDDGETN  120
SSRSLSVSDN NDDRKDKLSS GDNKEDHEKQ LKGIREDMEI LREDKSHLEI ILEAKNVEVR  180
KFFSRINDLD LQLKKEKEEC HRMTSKMKKF IKAHGRLLKA QEELKRSQAR FERLGDLLAS  240
DILKRGANEE GSSINVDEDP YGYERSLNAA APRKRSSEEA KAVKKRREPD SDTISRPDKY  300
RSEGTVAELD KQNKGSETIK SSYLKKKLWE DEKDKLGNDV SSAKTDKVKD SPVYVLPSTG  360
MAAHAMDDPI EAVELENRHE QMDASLENDA DEETRLPIMP PCSLPPYEGD DEEVDVD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	272	286	RKRSSEEAKAVKKRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002451585.2	0.0	zinc finger CCCH domain-containing protein 13 isoform X1
Swissprot	Q6H7U2	1e-161	C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBL	A0A194YMV6	0.0	A0A194YMV6_SORBI; Uncharacterized protein
STRING	Si017193m	1e-174	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3882	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	5e-27	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]