PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00037.1.g01420.1.am.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

MYB_related

Protein Properties

Length: 543aa MW: 58318.8 Da PI: 8.0182

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00037.1.g01420.1.am.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30	1.2e-09	259	288	1	30
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIart 30 ++rWT+eE+ l+ +v+++G+g W+tI r Zjn_sc00037.1.g01420.1.am.mkhc 259 KQRWTAEEEAALKAGVARHGPGKWRTILRD 288 79*************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.07E-9	256	304	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-9	259	304	IPR009057	Homeodomain-like
Pfam	PF00249	4.9E-6	259	287	IPR001005	SANT/Myb domain
CDD	cd11660	9.69E-14	260	341	No hit	No description
SuperFamily	SSF46785	1.03E-5	406	444	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.4E-6	408	444	IPR011991	Winged helix-turn-helix DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MERGRCLDAS QAVVGASPSR IFVQIQGRHH PQNRGDTAAP SLPRALALAH TSPLLLVSTS 60 VSLLLRAVLF PPNMFAKLSA LITHPCKRPC LALDIGTGSG QAAIVFLISS LFSKNSWRRM 120 DHHHHGGPLA EAAHWFDLPM FNDVTARMRP EVLSVEIQLR MSPDPVEDSD HDGGLPPHHP 180 PPGSSGPNGF LHLIARLGHL ALEAEPLVLT EFPSPRPPPD APWRDPPLEL PADFVPGAGG 240 GGGGGRAEDA QHLAMGAPKQ RWTAEEEAAL KAGVARHGPG KWRTILRDPD FGPLLSLRSN 300 VDLKVGPAAR RGSRGGSAGR FCEFAGLGGL AISELDKWRN LSVTAGGYGS REKARMALKK 360 GRQVPKVPAE SMEVDEYHMD NVHNAFLDVQ PLAMVVEPLQ LGDSPDKSVV RLDEIILEAI 420 KNLKKASGSN KAAIASYIEV NQKYRIAPTS PSLGGKSTKL YSMEEMNRKN NVKQLAKPQV 480 DSKLEKMRSM TKEEAAVFAA KAVAEAEVAI AEAEEAARVA EAAEADAEAA KVFLEAVTML 540 RAC

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MERGRCLDAS QAVVGASPSR IFVQIQGRHH PQNRGDTAAP SLPRALALAH TSPLLLVSTS  60
VSLLLRAVLF PPNMFAKLSA LITHPCKRPC LALDIGTGSG QAAIVFLISS LFSKNSWRRM  120
DHHHHGGPLA EAAHWFDLPM FNDVTARMRP EVLSVEIQLR MSPDPVEDSD HDGGLPPHHP  180
PPGSSGPNGF LHLIARLGHL ALEAEPLVLT EFPSPRPPPD APWRDPPLEL PADFVPGAGG  240
GGGGGRAEDA QHLAMGAPKQ RWTAEEEAAL KAGVARHGPG KWRTILRDPD FGPLLSLRSN  300
VDLKVGPAAR RGSRGGSAGR FCEFAGLGGL AISELDKWRN LSVTAGGYGS REKARMALKK  360
GRQVPKVPAE SMEVDEYHMD NVHNAFLDVQ PLAMVVEPLQ LGDSPDKSVV RLDEIILEAI  420
KNLKKASGSN KAAIASYIEV NQKYRIAPTS PSLGGKSTKL YSMEEMNRKN NVKQLAKPQV  480
DSKLEKMRSM TKEEAAVFAA KAVAEAEVAI AEAEEAARVA EAAEADAEAA KVFLEAVTML  540
RAC

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HF679460	2e-51	HF679460.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB54 protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818200.1	3e-98	single myb histone 1
TrEMBL	A0A3L6SQP0	1e-102	A0A3L6SQP0_PANMI; Single myb histone 1-like
STRING	Pavir.Ea02064.1.p	1e-98	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1324	38	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	5e-39	telomere repeat binding factor 1