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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Zjn_sc00036.1.g02190.1.am.mkhc |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
C3H |
| Protein Properties |
Length: 293aa MW: 32565.1 Da PI: 9.4775 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00036.1.g02190.1.am.mkhc | genome | ZGD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 31.8 | 2.5e-10 | 37 | 61 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
+++ C f++r+ tCkyG+ C+F H+
Zjn_sc00036.1.g02190.1.am.mkhc 37 GQKACAFYMRSRTCKYGEDCRFDHP 61
6789********************8 PP
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| 2 | zf-CCCH | 37.3 | 4.7e-12 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
++ C+++ +tG Ck+G++C+F H++
Zjn_sc00036.1.g02190.1.am.mkhc 90 ERVCSYYEKTGKCKFGASCRFDHPK 114
689********************96 PP
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| 3 | zf-CCCH | 36.5 | 7.9e-12 | 181 | 205 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
++ C+f+++tGtCky d+CkF+H+
Zjn_sc00036.1.g02190.1.am.mkhc 181 GETVCDFYMKTGTCKYTDKCKFHHP 205
6789********************8 PP
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| 4 | zf-CCCH | 38.7 | 1.7e-12 | 237 | 260 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
e C f++++GtCk+G +C+F H+p
Zjn_sc00036.1.g02190.1.am.mkhc 237 EVCAFYMKSGTCKFGVQCRFDHPP 260
78********************97 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SuperFamily | SSF90229 | 1.02E-5 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.638 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.0013 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 9.7E-8 | 37 | 61 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.676 | 87 | 115 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.7E-6 | 87 | 114 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.01E-6 | 88 | 115 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.1E-9 | 90 | 114 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.9E-6 | 91 | 114 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.96E-7 | 178 | 207 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.549 | 179 | 207 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 4.2E-7 | 179 | 206 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.6E-9 | 181 | 205 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.1E-6 | 184 | 205 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.263 | 233 | 261 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.3E-6 | 233 | 260 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.35E-6 | 235 | 262 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 2.0E-5 | 237 | 260 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 7.8E-10 | 237 | 260 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MGRHSTVGQS EPLYSSNTMV KRPRLESNLT IYPRRPGQKA CAFYMRSRTC KYGEDCRFDH 60
PHWVPEGGIP NWREKPKSAD STALPVRPSE RVCSYYEKTG KCKFGASCRF DHPKENEMPT 120
LIGRQTIYTA TIDAEVCNVS TDGSTPEKKH TPAGPAEAHN SKGLPIRPGE PEPVTYPQRP 180
GETVCDFYMK TGTCKYTDKC KFHHPIDRSV PRPNESWDPQ QTVILTPAGL PRREDAEVCA 240
FYMKSGTCKF GVQCRFDHPP PEEAISRLKA AGGKKGAKKA AKLMAAGGKK GAK
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