PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00036.1.g00330.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 395aa    MW: 42247.9 Da    PI: 5.8936
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00036.1.g00330.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY28.72.7e-09178200123
                                   ---SS-EEEEEEE--TT-SS-EE CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprs 23 
                                   ldDg +WrKYGqK++ g+++prs
  Zjn_sc00036.1.g00330.1.am.mk 178 LDDGISWRKYGQKDILGAKYPRS 200
                                   58********************8 PP
2WRKY37.93.6e-122112522159
                                   -EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY  21 prsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                    r+Y+rCt++   +C++ k+v+r++ dp +++++Y+g H++ 
  Zjn_sc00036.1.g00330.1.am.mk 211 VRAYFRCTHRhsqDCHASKQVQRADGDPLLFDVVYNGYHTCA 252
                                   69*******98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-24164253IPR003657WRKY domain
SuperFamilySSF1182902.88E-19172253IPR003657WRKY domain
PROSITE profilePS5081116.134173249IPR003657WRKY domain
SMARTSM007743.0E-32178253IPR003657WRKY domain
PfamPF031061.8E-6179200IPR003657WRKY domain
PfamPF031065.5E-11212251IPR003657WRKY domain
PROSITE patternPS006780346360IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MPGKQSKGRT VKAPYSSTHL PKSKRSWMTA TEQREAERAV AAMEGLSEER RALVGELVQV  60
LEMARQLDAH MAGQQLGGGG EERCRALVAT MRASIDRSVR IARSCCADEA AGRLPVLGRP  120
ESQPSGGGDG SPLSAGSDQA GDSRGSGNAA GQCKKRKSTQ PKWETQVRVS AVQDVAPLDD  180
GISWRKYGQK DILGAKYPRS VSAALDPYFL VRAYFRCTHR HSQDCHASKQ VQRADGDPLL  240
FDVVYNGYHT CAQAQAVARP SNQETPHAAS GENSPPQQTQ AGLEQTTGDS TPMFERTVQP  300
FALPSNNPAY DDGCKTSSGF PAGSVVAASA FMSSPAVEAT PESQLVTSSS SNHAVGVWNV  360
PEVELASTTN SPMGDMDFMF PLDDAADFLE DAEYF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-17175251568OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0032121e-45AP003212.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0049H05.
GenBankAP0032941e-45AP003294.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0694A04.
GenBankAP0149571e-45AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY6769261e-45AY676926.1 Oryza sativa (indica cultivar-group) transcription factor WRKY98 (WRKY98) mRNA, complete cds.
GenBankCP0126091e-45CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458250.11e-106probable WRKY transcription factor 41
TrEMBLA0A0A9VEZ71e-111A0A0A9VEZ7_ARUDO; Uncharacterized protein
STRINGSb03g029920.11e-106(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.17e-34WRKY family protein