PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00034.1.g02530.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 379aa MW: 40480 Da PI: 9.6605

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00034.1.g02530.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	100.4	2.5e-31	194	318	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratks 80 lp+GfrFhPtdeel+ +yL++k+ + +l++ ++i+ +d+ +++PwdL ++e + F+ +++ + ++ra+ + Zjn_sc00034.1.g02530.1.am.mk 194 LPVGFRFHPTDEELLLHYLRRKALACSLPA-DIIPVADLARLHPWDLV-PPGDADEERFLFHLPATRCWrRAGGARRAAGT 272 79**************************.99**********5.2334566777666665555516778888 PP NAM 81 gyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 g+W+a+gk k v+s g+ vg k+tLvf ++ g++tdW+mheyrl Zjn_sc00034.1.g02530.1.am.mk 273 GVWRASGKAKLVVSPrCGRPVGEKRTLVFC---HRGGKRTDWLMHEYRL 318 ********99878999*****9...677889******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-40	191	358	IPR003441	NAC domain
PROSITE profile	PS51005	39.762	194	359	IPR003441	NAC domain
Pfam	PF02365	1.3E-19	195	318	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MRRPETCPRG HLRGSINRSP VPSLAAGTCR GGTGVVSSGG GLVVAVYARR TRNESWDGHR 60 RGGSTVHQDR RHGMERDATH ATPSVLFLYP ARAPAVPSSS LHATDATAEA CASDSERHCD 120 VFPELEAHPR RTALVVLPLP QSTESSAAIT DVRTSSPSCM LGGAGHRASR RCVAMEARQA 180 AGAAAGGGGA LAGLPVGFRF HPTDEELLLH YLRRKALACS LPADIIPVAD LARLHPWDLV 240 PPGDADEERF LFHLPATRCW RRAGGARRAA GTGVWRASGK AKLVVSPRCG RPVGEKRTLV 300 FCHRGGKRTD WLMHEYRLLP AGLLLPHNPS SAAPHVMNCH GDGAAAGAED WVVCRIFKRT 360 KPGHGGRGGE EAEEIPSLY

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MRRPETCPRG HLRGSINRSP VPSLAAGTCR GGTGVVSSGG GLVVAVYARR TRNESWDGHR  60
RGGSTVHQDR RHGMERDATH ATPSVLFLYP ARAPAVPSSS LHATDATAEA CASDSERHCD  120
VFPELEAHPR RTALVVLPLP QSTESSAAIT DVRTSSPSCM LGGAGHRASR RCVAMEARQA  180
AGAAAGGGGA LAGLPVGFRF HPTDEELLLH YLRRKALACS LPADIIPVAD LARLHPWDLV  240
PPGDADEERF LFHLPATRCW RRAGGARRAA GTGVWRASGK AKLVVSPRCG RPVGEKRTLV  300
FCHRGGKRTD WLMHEYRLLP AGLLLPHNPS SAAPHVMNCH GDGAAAGAED WVVCRIFKRT  360
KPGHGGRGGE EAEEIPSLY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-25	194	359	17	165	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-25	194	359	17	165	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-25	194	359	17	165	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-25	194	359	17	165	NO APICAL MERISTEM PROTEIN
3swm_A	5e-25	194	359	20	168	NAC domain-containing protein 19
3swm_B	5e-25	194	359	20	168	NAC domain-containing protein 19
3swm_C	5e-25	194	359	20	168	NAC domain-containing protein 19
3swm_D	5e-25	194	359	20	168	NAC domain-containing protein 19
3swp_A	5e-25	194	359	20	168	NAC domain-containing protein 19
3swp_B	5e-25	194	359	20	168	NAC domain-containing protein 19
3swp_C	5e-25	194	359	20	168	NAC domain-containing protein 19
3swp_D	5e-25	194	359	20	168	NAC domain-containing protein 19
4dul_A	4e-25	194	359	17	165	NAC domain-containing protein 19
4dul_B	4e-25	194	359	17	165	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1E5W9V1	1e-73	A0A1E5W9V1_9POAL; NAC transcription factor ONAC010
STRING	Pavir.Eb03721.1.p	1e-75	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8233	30	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	2e-26	NAC domain containing protein 83