PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00034.1.g01120.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 382aa    MW: 42062 Da    PI: 8.6899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00034.1.g01120.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.31.2e-1261112255
                                   HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   + +hn+ Er RR+++N+ ++ Lr+llP+ +   + kK+s  +++ ++ +YI +Lq
  Zjn_sc00034.1.g01120.1.sm.mk  61 KLSHNAYERDRRKELNELYSSLRSLLPNdD---HTKKMSIPTTVCRVLKYIPELQ 112
                                   579*************************44...6666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.49E-1557127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.58659111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1161127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-1061112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.42E-861115No hitNo description
SMARTSM003538.8E-865117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDDQLFDDHF ASNISALEAD IFSGDQLPWP DLDLDDDNIL QDLAPPAANA SSSGGSGSRS  60
KLSHNAYERD RRKELNELYS SLRSLLPNDD HTKKMSIPTT VCRVLKYIPE LQKEVDSLER  120
KKEELTKANC RKRGNDMNTT ESKTPVVSVT FLNDMEIIVQ VSLLCNLATT TLPLSKCIKV  180
LENKGLHMIS SSTYSTFENR TFYSLHLQRS QRMDKERSAF CDELERVIRK KAEGPHPMTH  240
PLRRRQDPAP PLLRPHSRHP RPLRTLLSLN TRRRRLRPLR APQPLRPAVT AARGHYATVA  300
PGPVAAAPGP CAATALGLAA ADPGPAAAAP SPAAAAAIHC AVASPGYYDT TPIPLRLPCP  360
RPPLCAPCSI EVNLRVDEEA KS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313618.18e-97transcription factor bHLH101-like
RefseqXP_025819629.17e-97protein IRON-RELATED TRANSCRIPTION FACTOR 2-like
SwissprotA2WZ607e-84IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLA0A3L6PK749e-97A0A3L6PK74_PANMI; Transcription factor ORG3-like
STRINGSb03g046090.13e-96(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04150.12e-29bHLH family protein