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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00033.1.g02690.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HSF | ||||||||
Protein Properties | Length: 359aa MW: 40586.3 Da PI: 4.6968 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110 | 1.8e-34 | 42 | 132 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEE CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiwe 80 Fl+k+++++ed++++ ++sws+ gnsfvv+d++ fa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv+ ++ we Zjn_sc00033.1.g02690.1.sm.mkhc 42 FLTKTFDLVEDPSTDAVVSWSRAGNSFVVWDPHVFADSLLPRLFKHSNFSSFVRQLNTYGFRKVDPDK---------WE 111 9****************************************************************999.........** PP EEESXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 81 FkhksFkkgkkellekikrkk 101 F+++ F +g+++ll++ikr+k Zjn_sc00033.1.g02690.1.sm.mkhc 112 FANEGFLRGQRHLLKTIKRRK 132 *******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 4.0E-38 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.26E-34 | 38 | 131 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.9E-60 | 38 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.2E-19 | 42 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.2E-31 | 42 | 131 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.2E-19 | 80 | 92 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 81 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.2E-19 | 93 | 105 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MGSSAPGIVK EELLEHEDGG GGGGRDAPRP MEGLHEVGPP PFLTKTFDLV EDPSTDAVVS 60 WSRAGNSFVV WDPHVFADSL LPRLFKHSNF SSFVRQLNTY GFRKVDPDKW EFANEGFLRG 120 QRHLLKTIKR RKPLSTAPAS RQQAPAPASC LEVGEFGFEE EIDRLKRDKN ILISEVVKLR 180 QEQQTTREHV HAMEERLRTA EQKQVQMMGF LARAMRNPEF FQQLVQQQDK RKELEDAISK 240 KRRRPIDYAP FYNPGDSSQS EQLDSQFLFD SGVLDGLTEP GMPELENLAA NMQELGKGNA 300 DDVKMDQESG QPELNDDFWE ELLVEDYGDK AGHPELEART EVVDEIAQQL GYLSSTSPK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 8e-27 | 23 | 131 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 8e-27 | 23 | 131 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 8e-27 | 23 | 131 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 130 | LKTIKRR |
2 | 229 | 243 | KRKELEDAISKKRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:16202242}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022679240.1 | 0.0 | heat stress transcription factor A-2c isoform X2 | ||||
Swissprot | Q338B0 | 0.0 | HFA2C_ORYSJ; Heat stress transcription factor A-2c | ||||
TrEMBL | K4ABP7 | 0.0 | K4ABP7_SETIT; Uncharacterized protein | ||||
STRING | Si036304m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-113 | heat shock transcription factor A6B |
Publications ? help Back to Top | |||
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