PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00033.1.g00990.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 299aa MW: 32483.1 Da PI: 4.9087 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.3 | 2.2e-19 | 107 | 156 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ r r++lg+f ta+ Aa+a++aa+++l+g Zjn_sc00033.1.g00990.1.am.mkhc 107 RYRGVRQRP-WGKWAAEIRDPV----RgVRVWLGTFSTADSAARAYDAAARRLRG 156 7********.**********63....56*************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.59E-17 | 107 | 163 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.7E-32 | 107 | 166 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-37 | 107 | 170 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.58E-22 | 107 | 165 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.9E-13 | 107 | 156 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.684 | 107 | 164 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-11 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.1E-11 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 299 aa Download sequence Send to blast |
MCGGAIIADL IPERSRCSRQ PSHPALPSKK RSWRDHDADT VDIDDFEAAF EDFEGDSDEE 60 AVVHVDDDEE SELTLLAPLG RKPLSPLFPR GARRAKDAIA MRPGARRYRG VRQRPWGKWA 120 AEIRDPVRGV RVWLGTFSTA DSAARAYDAA ARRLRGTKAK LNFPSSSSPP RRKRRRDNAG 180 TCTSSPSTKT DVPAFVPAVD YGATAAVFGE NLSSQKLADE GDPALLQPSL ACAAASWSAG 240 DSEVVDPPYD FSGEIMTSCF AFTGCEYESL ETLFSGETAV EEHGLMGPWS FGEGGSFIF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-21 | 106 | 164 | 4 | 63 | ATERF1 |
3gcc_A | 6e-21 | 106 | 164 | 4 | 63 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 171 | 175 | RKRRR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791795.1 | 6e-68 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A1E5W3L0 | 7e-80 | A0A1E5W3L0_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib02796.1.p | 3e-68 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15195 | 14 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47520.1 | 1e-19 | ERF family protein |