 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Zjn_sc00032.1.g00480.1.am.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 286aa MW: 31666.7 Da PI: 4.7598 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00032.1.g00480.1.am.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 60.8 | 2.1e-19 | 69 | 123 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++ ++q+ +Le++Fe + +++ e+++++A+ l+L rqV vWFqNrRa++k
Zjn_sc00032.1.g00480.1.am.mk 69 EKKRRLAADQVSALERCFEADDKLDPERKARIARDLRLHPRQVAVWFQNRRARWK 123
6778999***********************************************9 PP
|
| 2 | HD-ZIP_I/II | 124.4 | 5.2e-40 | 69 | 159 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81
ekkrrl+++qv++LE++Fe+++kL+perK+++ar+L+l+prqvavWFqnrRAR+ktkq+E+d+++L++++dal++e ++L+
Zjn_sc00032.1.g00480.1.am.mk 69 EKKRRLAADQVSALERCFEADDKLDPERKARIARDLRLHPRQVAVWFQNRRARWKTKQIERDFNTLRSRHDALRHECDELR 149
69******************************************************************************* PP
HD-ZIP_I/II 82 keveeLreel 91
+++++L++e+
Zjn_sc00032.1.g00480.1.am.mk 150 RDKDALAAEV 159
******9886 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 286 aa
Download sequence Send
to blast |
MKRPSCRGSS VASQGTQEQE SEDSSRYMER QGLDVHGTVD VVASAGTYGD EEEDEDELEL 60
AGGRGGLREK KRRLAADQVS ALERCFEADD KLDPERKARI ARDLRLHPRQ VAVWFQNRRA 120
RWKTKQIERD FNTLRSRHDA LRHECDELRR DKDALAAEVP IRELREKVEK QMAVKLESME 180
DRPLQAVTTV YKDGSTDSDS SAVFNEEASP YSGGAAFDHH PSFNGFTSFL ASSSALGSSF 240
PSMYSGGPHL DQPEADGFLG AVATTDGFLA EEQGTGLGGW YGGDGW
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 117 | 125 | RRARWKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FP099753 | 8e-93 | FP099753.1 Phyllostachys edulis cDNA clone: bphyem212a11, full insert sequence. |
