PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00031.1.g03130.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | B3 | ||||||||
Protein Properties | Length: 557aa MW: 59302.6 Da PI: 6.9656 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.5 | 1e-17 | 368 | 456 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 ffkv+ p+ +++ l +p +f e ++ ++ + ++l+ +sg sW+v l + +s++ v+t+GWkeF++++ L g f++ Zjn_sc00031.1.g03130.1.am.mk 368 FFKVFFPEQSGEG--LKIPSPFHEYVEEAPN--RVVSLRGPSGHSWRVVL--TTGSQGLVFTQGWKEFARDHSLIPGHFLL 442 8999988887765..9******954465544..48***************..***************************** PP EEE-SSSEE..EEEEE CS B3 82 Fkldgrsefelvvkvf 97 F++dg sef v vf Zjn_sc00031.1.g03130.1.am.mk 443 FTYDGCSEF--SVAVF 456 ***986776..66665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-21 | 366 | 457 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-19 | 367 | 457 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.22E-16 | 368 | 456 | No hit | No description |
SMART | SM01019 | 1.1E-13 | 368 | 462 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-15 | 368 | 454 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.957 | 381 | 459 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
MQGASVGEDG RRPGAVAGRE EGGTDAAHTL LSVLPFPSDP PLHLCYLVSG DALDSLHLLA 60 SLLSPSPTLS SAHLVDVAFL AASTIDFDAA ASRACRAVEG GGSPALTSDK AVTAVDQFEA 120 KVAAAARGWG AGWERRGGEG RRETGEEGAQ IRWGQMNRWG EQSAGDERWR SGVVLARDVV 180 QKIHFGGVPK VSPKSSYRGG RALHLSQGIA TARGTAVCPC SPTHPVKEVE RQSVSHYRGS 240 EMVACPALPA GASESVGGDS EVSQNSEFRC CVTRGEDALV AVTRRPEIRA PAGVRQPEIE 300 TEGHTKQQGR SSAAAATAVM LNGTGKEKEK QVEKGRDRRK EKRSGKEQRK EIAREVQDDV 360 PIAAGEQFFK VFFPEQSGEG LKIPSPFHEY VEEAPNRVVS LRGPSGHSWR VVLTTGSQGL 420 VFTQGWKEFA RDHSLIPGHF LLFTYDGCSE FSVAVFTPLG VEDKAALKVQ PCKELLVKQE 480 EEEGTVDVAA DGTLEASDTP FLEGNGATTG KRSTKPTQPI PAVGCRIRFE SPALGLPGRP 540 APCCFIRFSV GGSKTTC |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4461 | 37 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53310.1 | 2e-16 | B3 family protein |