PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00031.1.g00570.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 342aa    MW: 37463.2 Da    PI: 6.9412
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00031.1.g00570.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.12.6e-47161351129
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                                     lppGfrFhPtdee+v+ yL +k  + +++  ++i+ev+++k+eP+dLp+k+k +ekewyfF+++d ky+tg r+nratk
  Zjn_sc00031.1.g00570.1.sm.mkhc  16 LPPGFRFHPTDEEVVTSYLLRKFLNPSFDP-RAIAEVNLNKCEPRDLPSKAKMGEKEWYFFCHKDMKYPTGMRTNRATK 93 
                                     79*************************999.88***************99999************************** PP

                             NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                     +gyWkatgkd+e+++         ktLvfy+grap+g+kt+Wvmhe+rle
  Zjn_sc00031.1.g00570.1.sm.mkhc  94 EGYWKATGKDREIFK--------PKTLVFYTGRAPRGSKTNWVMHEFRLE 135
                                     **************9........68**********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-5513161IPR003441NAC domain
PROSITE profilePS5100543.88516161IPR003441NAC domain
PfamPF023651.5E-2417134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MVERGVVKQE QGDLFLPPGF RFHPTDEEVV TSYLLRKFLN PSFDPRAIAE VNLNKCEPRD  60
LPSKAKMGEK EWYFFCHKDM KYPTGMRTNR ATKEGYWKAT GKDREIFKPK TLVFYTGRAP  120
RGSKTNWVMH EFRLEGKYRD TANLVHLTPK DEWVVCKVFH KSNGEDNKKA NAAAAAAAGA  180
GDGGDDVLVD STIDPVCFEY STSCLLDTTT TTTTTMDVTA MAPYDAAAML TNVVGSFVDD  240
LPNYTLIGDT TSSSRRNLHQ HQTTTVAGST AVPASSGYSS PWTTNTLRPD YSYLAMGSYD  300
LLDQAMTAKA LVLGGVVSPA VAGGLPSYPV AGTSQQSSLG HY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-461316314167NO APICAL MERISTEM PROTEIN
1ut4_B5e-461316314167NO APICAL MERISTEM PROTEIN
1ut7_A5e-461316314167NO APICAL MERISTEM PROTEIN
1ut7_B5e-461316314167NO APICAL MERISTEM PROTEIN
3swm_A6e-461316317170NAC domain-containing protein 19
3swm_B6e-461316317170NAC domain-containing protein 19
3swm_C6e-461316317170NAC domain-containing protein 19
3swm_D6e-461316317170NAC domain-containing protein 19
3swp_A6e-461316317170NAC domain-containing protein 19
3swp_B6e-461316317170NAC domain-containing protein 19
3swp_C6e-461316317170NAC domain-containing protein 19
3swp_D6e-461316317170NAC domain-containing protein 19
4dul_A5e-461316314167NAC domain-containing protein 19
4dul_B5e-461316314167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0985052e-78FP098505.1 Phyllostachys edulis cDNA clone: bphyem203e08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977422.11e-123NAC domain-containing protein 77
SwissprotQ5CD175e-86NAC77_ORYSJ; NAC domain-containing protein 77
TrEMBLK3Y8761e-122K3Y876_SETIT; Uncharacterized protein
STRINGSi010417m1e-122(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51203063
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-74Arabidopsis NAC domain containing protein 87