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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00031.1.g00560.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 389aa MW: 42838.6 Da PI: 7.5209 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.8 | 1.6e-51 | 8 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 lp+GfrFhPtdeel+v+yL +++++ ++++ +i+ev+iy+++PwdLp k+ +e+ewyfFs+rd+ky++g+r+nra+ Zjn_sc00031.1.g00560.1.am.mkhc 8 LPAGFRFHPTDEELIVHYLMNQAAAVPCPV-PIIAEVNIYQCNPWDLPPKALFGETEWYFFSPRDRKYPNGTRPNRAAG 85 799***************************.88**************96666789************************ PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 sgyWkatg+dk+++s+ ++e++g+kk Lvfy+g+ pkg+ktdW+mheyrl Zjn_sc00031.1.g00560.1.am.mkhc 86 SGYWKATGTDKAIVSApTSENIGVKKALVFYRGKPPKGVKTDWIMHEYRL 135 **************9989999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.23E-63 | 3 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.955 | 8 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-26 | 9 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MATRMPSLPA GFRFHPTDEE LIVHYLMNQA AAVPCPVPII AEVNIYQCNP WDLPPKALFG 60 ETEWYFFSPR DRKYPNGTRP NRAAGSGYWK ATGTDKAIVS APTSENIGVK KALVFYRGKP 120 PKGVKTDWIM HEYRLTVANN KSTRRRGSSS SMRLDDWVLC RIYKKSNNFQ CFSDLQDQDG 180 SSTVEEPDSS LDNNNMTMNN GGAPSPKSEE AAHANGDGQQ QFHDPGHLTT GMTKSCSLTD 240 LLNTIDYSTL SQLLLDAPPA ETDHRTQLQQ SPLIYTTPAW QQPHNNYNNY SCNMNNTTAS 300 VNMAQDYGAS YNGLKRKRVM TTDGAAGSFD DGGSSLKRKL QLPSDSRTGS GFFFGSSSGG 360 SYCNQQLAEA ASTGGFQYSG LLSHPFLNQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 8e-73 | 7 | 170 | 14 | 173 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269|PubMed:29760199}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269|PubMed:29760199}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK069257 | 1e-139 | AK069257.1 Oryza sativa Japonica Group cDNA clone:J023011O06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828039.1 | 1e-162 | NAC transcription factor 29-like | ||||
Swissprot | K4BNG7 | 3e-82 | NAP2_SOLLC; NAC domain-containing protein 2 | ||||
TrEMBL | A0A2S3IC67 | 1e-161 | A0A2S3IC67_9POAL; Uncharacterized protein | ||||
STRING | Si026530m | 1e-155 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3803 | 37 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 2e-73 | NAC domain containing protein 47 |
Publications ? help Back to Top | |||
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