PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00030.1.g02470.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 274aa    MW: 30095.6 Da    PI: 8.1167
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00030.1.g02470.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.98.8e-0982126554
                                   HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                   h+++Er RR+ri +++  L+el+P+ +      K + a++L +  +Y++ L
  Zjn_sc00030.1.g02470.1.sm.mk  82 HSIAERLRRERIAEWIRALQELVPNmN------KTDRAAMLDEILDYVNFL 126
                                   99***********************55......9***********999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-1375132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.03E-1075131No hitNo description
PROSITE profilePS5088815.12977126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-1379131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-682126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-983132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MSCSLTVFGG GLMQDRYPVQ LAGLFPPVFS GAGGMQQTNL CPPPPHQVFH AQPKPGEGAM  60
AQQPPVPRPK VRARRGQATD PHSIAERLRR ERIAEWIRAL QELVPNMNKT DRAAMLDEIL  120
DYVNFLRLQV KGEASDGGST QHIWEKWSTD GTEKLVAKLM EEDIGAAMQF FQSKALRMMP  180
ISLAMDRDPV QLAGLFPPVF AGAGGMQQMN LCPPPPPHQV FHVQPKLDEG AMAQQPQPPA  240
LRLKVQARRG QATDPHSIAE RVSNDFGVVD TSVT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18691RLRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461549.15e-94transcription factor UNE12
SwissprotQ93Y002e-46BH007_ARATH; Transcription factor bHLH7
TrEMBLA0A1W0W2G11e-92A0A1W0W2G1_SORBI; Uncharacterized protein
STRINGSb02g004570.12e-93(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.32e-37bHLH family protein