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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00030.1.g02430.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 26011.3 Da PI: 6.5103 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 23.1 | 1.4e-07 | 127 | 158 | 5 | 40 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsK 40 h+++Er RR+ri +++ L+el+P+ +k sK Zjn_sc00030.1.g02430.1.sm.mkhc 127 HSIAERLRRERIAERIRALQELVPNT----NKASSK 158 99***********************7....344455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-8 | 120 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 9.87 | 122 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.7E-8 | 124 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.2E-5 | 127 | 158 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MAGQQPPGGS EDDFLEHLFT FPTAGAGGHA GAGGGGGGDH PFPLALSLDA AAEASGAAKP 60 DRDPVQLAGL FPPVFAGAGG MQQTNLCPPP PHQVFHAQPK PGEGAMAQPP APRPKVRARR 120 GQATDPHSIA ERLRRERIAE RIRALQELVP NTNKASSKVA QLVADIPLSV KGEASDGGST 180 QHIWEKWSTD GTEKQVAKLM EEDIGAAMQF LQSKALCMMP ISLAMAIYDT QHPQEHHPLK 240 PEPNSSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 136 | RLRRER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804227.1 | 1e-125 | transcription factor UNE12 | ||||
Swissprot | O22768 | 2e-46 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A2S3GW17 | 1e-124 | A0A2S3GW17_9POAL; Uncharacterized protein | ||||
STRING | Sb02g004570.1 | 1e-124 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2656 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 5e-35 | bHLH family protein |
Publications ? help Back to Top | |||
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