PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Zjn_sc00030.1.g02430.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 247aa MW: 26011.3 Da PI: 6.5103

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00030.1.g02430.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.1	1.4e-07	127	158	5	40
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STC CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsK 40 h+++Er RR+ri +++ L+el+P+ +k sK Zjn_sc00030.1.g02430.1.sm.mkhc 127 HSIAERLRRERIAERIRALQELVPNT----NKASSK 158 99***********************7....344455 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-8	120	162	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.87	122	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.7E-8	124	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.2E-5	127	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MAGQQPPGGS EDDFLEHLFT FPTAGAGGHA GAGGGGGGDH PFPLALSLDA AAEASGAAKP 60 DRDPVQLAGL FPPVFAGAGG MQQTNLCPPP PHQVFHAQPK PGEGAMAQPP APRPKVRARR 120 GQATDPHSIA ERLRRERIAE RIRALQELVP NTNKASSKVA QLVADIPLSV KGEASDGGST 180 QHIWEKWSTD GTEKQVAKLM EEDIGAAMQF LQSKALCMMP ISLAMAIYDT QHPQEHHPLK 240 PEPNSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	131	136	RLRRER

Functional Description ? help Back to Top
Source	Description
UniProt	Required for ovule fertilization. {ECO:0000269\|PubMed:15634699}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804227.1	1e-125	transcription factor UNE12
Swissprot	O22768	2e-46	UNE12_ARATH; Transcription factor UNE12
TrEMBL	A0A2S3GW17	1e-124	A0A2S3GW17_9POAL; Uncharacterized protein
STRING	Sb02g004570.1	1e-124	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2656	35	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02590.3	5e-35	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]