PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00029.1.g03780.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 380aa    MW: 39756.1 Da    PI: 6.5031
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00029.1.g03780.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.86e-06284324954
                                   HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    r RR+r+ +++  L++l+P        K++ a++L +A  Y++ L
  Zjn_sc00029.1.g03780.1.sm.mk 284 ARLRRERVSERLRVLQRLVPGG-----SKMDTASMLDEAASYLRFL 324
                                   599*****************95.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.53E-10266329No hitNo description
PROSITE profilePS5088814.386275324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-9281332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.77E-13281334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDATFGRAGA GQQVDDYFSR QIGCSRFEMD DAFLGACFGQ QQCDGIGGEA GMCQVSSNFG  60
GAGGCSADVE GYPLAFLSSG TGVFDASLID AALLAFSREL GDSGAVSNGA MFSSYSCTTV  120
GNMSSGESNN YSGGSHDAEV LSPTSIMSAM SPTTPPPPPF PHASSHQQAV HPKRKVPDEY  180
TSSAAPTEPP PPTVPFPQPG CAKRRAGAAA TTSICFGVRD HGGVQDPAAR YEPDTEAMAQ  240
VKELIYRAAA MRSVSLGPDP EAVAAEKPRR KNVRISSDPQ TVAARLRRER VSERLRVLQR  300
LVPGGSKMDT ASMLDEAASY LRFLKSQVQA LETLGTTTTN GGGSSRSSAS QHCNYHNSSS  360
PGFLGFARSS NISHAGYVNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1265271EKPRRKN
2266271KPRRKN
3284289RLRRER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the negative regulation of flowering. May be involved in the repression of the flowering factor GI and HD1 by interacting with PIL13 and PIL15 and competing with PRR1. Possesses transactivation activity in yeast. {ECO:0000269|PubMed:21549224}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818336.11e-158transcription factor LATE FLOWERING-like
SwissprotA0A0P0WQ902e-47LF_ORYSJ; Transcription factor LATE FLOWERING
TrEMBLA0A2T7DHT31e-158A0A2T7DHT3_9POAL; Uncharacterized protein
STRINGPavir.Eb02901.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-28bHLH family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  2. Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
    An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
    N Biotechnol, 2011. 28(6): p. 788-97
    [PMID:21549224]