 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zjn_sc00029.1.g03690.1.sm.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
bHLH |
| Protein Properties |
Length: 454aa MW: 49145.6 Da PI: 7.4427 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00029.1.g03690.1.sm.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 41.6 | 2.3e-13 | 312 | 358 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h e+Er+RR+++N++f Lr ++Pk + K++Ka+ L A+ YI++L+
Zjn_sc00029.1.g03690.1.sm.mk 312 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 358
799***********************66......****************996 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009611 | Biological Process | response to wounding |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 454 aa
Download sequence Send
to blast |
MSWSETDAAL FTAVLGRDAA HHLATTPPHV DGPATAALAP ELQDRLHDLV ERGGAWTYGI 60
FWQESRIVLG WGDGHCRDGE AAHGDTTEAQ SAARKSALLR LHALYGGGDD DDGADYALRL 120
DRVTGAEMYF LASMYFSFPE GVGGPGRALA SRRHAWAAVD PRGPVPGWFV RASLAQAAGL 180
RTVVFLPCNG GVLELGSVVP VRETPEALRA IEAALAVTPA APEESMRIFG KDLSRRGQLP 240
AAAQANWAPP QLGGQTSPDD RKKDAVEQKP RDPPPKRVDF TKLEPNGQAV VEERKPRKRG 300
RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPKISK MDKASLLSDA IAYIQELEDR 360
LRGGAKSPPA VEVKAMQDDV VLRVTTPLYA HPASRVFHAI RDARLSVVAS ELAVADDAVT 420
HTLMLRSPGP ERLTAEAVLA AMSRGTEGRD TPSP
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5gnj_A | 1e-24 | 306 | 361 | 2 | 57 | Transcription factor MYC2 |
| 5gnj_B | 1e-24 | 306 | 361 | 2 | 57 | Transcription factor MYC2 |
| 5gnj_E | 1e-24 | 306 | 361 | 2 | 57 | Transcription factor MYC2 |
| 5gnj_F | 1e-24 | 306 | 361 | 2 | 57 | Transcription factor MYC2 |
| 5gnj_G | 1e-24 | 306 | 361 | 2 | 57 | Transcription factor MYC2 |
| 5gnj_I | 1e-24 | 306 | 361 | 2 | 57 | Transcription factor MYC2 |
| 5gnj_M | 1e-24 | 306 | 361 | 2 | 57 | Transcription factor MYC2 |
| 5gnj_N | 1e-24 | 306 | 361 | 2 | 57 | Transcription factor MYC2 |
| Search in ModeBase |
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 293 | 301 | RKPRKRGRK |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KJ727698 | 1e-134 | KJ727698.1 Zea mays clone pUT5637 bHLH transcription factor (bHLH57) gene, partial cds. |
