PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00029.1.g03690.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 454aa    MW: 49145.6 Da    PI: 7.4427
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00029.1.g03690.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.3e-13312358455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                   +h e+Er+RR+++N++f  Lr ++Pk +      K++Ka+ L  A+ YI++L+
  Zjn_sc00029.1.g03690.1.sm.mk 312 NHVEAERQRREKLNQRFYALRAVVPKiS------KMDKASLLSDAIAYIQELE 358
                                   799***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.5E-3942212IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.047308357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.38E-14311362No hitNo description
Gene3DG3DSA:4.10.280.103.0E-16311361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16311363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-11312358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.1E-16314363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MSWSETDAAL FTAVLGRDAA HHLATTPPHV DGPATAALAP ELQDRLHDLV ERGGAWTYGI  60
FWQESRIVLG WGDGHCRDGE AAHGDTTEAQ SAARKSALLR LHALYGGGDD DDGADYALRL  120
DRVTGAEMYF LASMYFSFPE GVGGPGRALA SRRHAWAAVD PRGPVPGWFV RASLAQAAGL  180
RTVVFLPCNG GVLELGSVVP VRETPEALRA IEAALAVTPA APEESMRIFG KDLSRRGQLP  240
AAAQANWAPP QLGGQTSPDD RKKDAVEQKP RDPPPKRVDF TKLEPNGQAV VEERKPRKRG  300
RKPANGREEP LNHVEAERQR REKLNQRFYA LRAVVPKISK MDKASLLSDA IAYIQELEDR  360
LRGGAKSPPA VEVKAMQDDV VLRVTTPLYA HPASRVFHAI RDARLSVVAS ELAVADDAVT  420
HTLMLRSPGP ERLTAEAVLA AMSRGTEGRD TPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-24306361257Transcription factor MYC2
5gnj_B1e-24306361257Transcription factor MYC2
5gnj_E1e-24306361257Transcription factor MYC2
5gnj_F1e-24306361257Transcription factor MYC2
5gnj_G1e-24306361257Transcription factor MYC2
5gnj_I1e-24306361257Transcription factor MYC2
5gnj_M1e-24306361257Transcription factor MYC2
5gnj_N1e-24306361257Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293301RKPRKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00101PBMTransfer from AT2G46510Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7276981e-134KJ727698.1 Zea mays clone pUT5637 bHLH transcription factor (bHLH57) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628703.10.0transcription factor bHLH13
TrEMBLA2ZX100.0A2ZX10_ORYSJ; Uncharacterized protein
STRINGONIVA01G32020.10.0(Oryza nivara)
STRINGORGLA01G0232100.10.0(Oryza glaberrima)
STRINGOBART01G28080.10.0(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.15e-63bHLH family protein