PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00029.1.g01660.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 940aa MW: 104613 Da PI: 6.5627

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00029.1.g01660.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5.1e-18	65	119	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++qle+Le+ ++ ++yps++ r eL++k+gLt+rq ++WF+ rR k++k Zjn_sc00029.1.g01660.1.sm.mkhc 65 KRMMKTPYQLEVLESTYAVQQYPSEALRMELSAKIGLTDRQLQMWFCHRRLKDRK 119 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.55E-17	44	119	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.7E-18	46	119	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.775	60	120	IPR001356	Homeobox domain
SMART	SM00389	1.6E-16	62	124	IPR001356	Homeobox domain
CDD	cd00086	1.17E-14	65	120	No hit	No description
Pfam	PF00046	9.6E-16	65	119	IPR001356	Homeobox domain
Pfam	PF05066	4.2E-16	714	782	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	7.9E-8	794	830	IPR028942	WHIM1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 940 aa Download sequence Send to blast
MDAGADAGGG VVIDADGAAK AVEEAPAEMT PPPLAPAPAP APTAGPSSAS GPGAGTSGSG 60 EKPVKRMMKT PYQLEVLEST YAVQQYPSEA LRMELSAKIG LTDRQLQMWF CHRRLKDRKP 120 PTKRQRCRDE EIALPPVMAP PPVLPLPAIP LASSDLMVGT ASPYDEPLHP TYRRGAGRSS 180 AVPRISLPDI GRRYYEPPPV LLPPPAAMQL TPSELRLIHS VESQLGEPLR DDGPVLGIEF 240 DPLPPGAFGA PIVPEQQKPQ VRSYDTKIFS RHDSKLLKAS AFLPTMETPF VPNSFGGKRK 300 STVSNPPIVQ PHLGSQAVHE YQFLPEQPSA TYDRASQSHY YDTPVELSNS RISPVTSGSR 360 LPHGSEEAAP SYAFQGQTSD SGLLPQSDRS QMFSTVQGDY EMNQSTSNLN SVPVEGQFGT 420 SHISGFENSL ISSERGVYHD DETSRVDRKR KHTEEAKIAK EVEAHERRIR KEIEKQDMLN 480 RKREEQKRKE MERLDRERRK EEERLLRERQ REEERFQREQ RREHERMEKF LLKQSRRAEK 540 QRQREEIRKQ KEAARQKAAS ERATARRIAR EYMELMEDER LELMELAAQS KGLPSMLHLD 600 NNTLQQLDTL QGMLSQFPPQ TVRLKVPFSI KPWTGSEDNV AKLLMDIEDV ARTPSIALGV 660 NPGGGHPHIV EGGHDCKDVI STLRSGSAAV NAAALMKERG YTHRLRSRHR LTPGTVKFAA 720 FHVLSLEGSK GLTILEVAEK IQKSGLRDLT TSKTPEASIA AALSRDSKLF ERTAPSTYCV 780 KSPYRKDPAD SETALSEGDY CDLSVEERLN ALVALIGVAT EGNSIRAVLE ERLELANALK 840 KQMWAEAQLD KRRSKEEFAS RMQWVVDEEA EEVAGEAEVE VEVEGSLEVL ADQGLALRMT 900 MLRMRRCQGR MDVEDVHMAV VVDEDVELLG LGSHLRCGHG

Sequence ? help Back to Top

Protein Sequence Length: 940 aa Download sequence Send to blast

MDAGADAGGG VVIDADGAAK AVEEAPAEMT PPPLAPAPAP APTAGPSSAS GPGAGTSGSG  60
EKPVKRMMKT PYQLEVLEST YAVQQYPSEA LRMELSAKIG LTDRQLQMWF CHRRLKDRKP  120
PTKRQRCRDE EIALPPVMAP PPVLPLPAIP LASSDLMVGT ASPYDEPLHP TYRRGAGRSS  180
AVPRISLPDI GRRYYEPPPV LLPPPAAMQL TPSELRLIHS VESQLGEPLR DDGPVLGIEF  240
DPLPPGAFGA PIVPEQQKPQ VRSYDTKIFS RHDSKLLKAS AFLPTMETPF VPNSFGGKRK  300
STVSNPPIVQ PHLGSQAVHE YQFLPEQPSA TYDRASQSHY YDTPVELSNS RISPVTSGSR  360
LPHGSEEAAP SYAFQGQTSD SGLLPQSDRS QMFSTVQGDY EMNQSTSNLN SVPVEGQFGT  420
SHISGFENSL ISSERGVYHD DETSRVDRKR KHTEEAKIAK EVEAHERRIR KEIEKQDMLN  480
RKREEQKRKE MERLDRERRK EEERLLRERQ REEERFQREQ RREHERMEKF LLKQSRRAEK  540
QRQREEIRKQ KEAARQKAAS ERATARRIAR EYMELMEDER LELMELAAQS KGLPSMLHLD  600
NNTLQQLDTL QGMLSQFPPQ TVRLKVPFSI KPWTGSEDNV AKLLMDIEDV ARTPSIALGV  660
NPGGGHPHIV EGGHDCKDVI STLRSGSAAV NAAALMKERG YTHRLRSRHR LTPGTVKFAA  720
FHVLSLEGSK GLTILEVAEK IQKSGLRDLT TSKTPEASIA AALSRDSKLF ERTAPSTYCV  780
KSPYRKDPAD SETALSEGDY CDLSVEERLN ALVALIGVAT EGNSIRAVLE ERLELANALK  840
KQMWAEAQLD KRRSKEEFAS RMQWVVDEEA EEVAGEAEVE VEVEGSLEVL ADQGLALRMT  900
MLRMRRCQGR MDVEDVHMAV VVDEDVELLG LGSHLRCGHG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269\|PubMed:22694359, ECO:0000269\|PubMed:23872538}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003223	7e-62	AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06.
GenBank	AP014957	7e-62	AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBank	CP012609	7e-62	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004969494.1	0.0	homeobox-DDT domain protein RLT2 isoform X1
Swissprot	Q9FFH1	0.0	RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBL	A0A368R972	0.0	A0A368R972_SETIT; Uncharacterized protein
STRING	Sb03g030770.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2283	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	1e-140	Homeodomain-like transcriptional regulator