PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00029.1.g01620.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 330aa    MW: 35860.2 Da    PI: 9.2742
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00029.1.g01620.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.43.4e-33802211128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk 72 
                                   lp+G++F+Ptd+el+ e+L+ k++ +        ++++  +i+   +i++++P++Lp  v ++    +fF++ +k+y+tg+
  Zjn_sc00029.1.g01620.1.sm.mk  80 LPAGVKFDPTDQELI-EHLEGKARPDArgklhplVDEFIpTIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGT 158
                                   799************.99***99887767776542222223665557**********.555555677************** PP

                           NAM  73 rknratk......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                   rk+r+++      + +W++tgk+++v+s +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Zjn_sc00029.1.g01620.1.sm.mk 159 RKRRKVHtdeeggETRWHKTGKTRPVFS-NGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 221
                                   ****744456555778************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.53E-3871240IPR003441NAC domain
PROSITE profilePS5100533.35280240IPR003441NAC domain
PfamPF023652.5E-1581221IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLATA AGVAAAAARK QQQQTSSPRV NLIRTCPSCG HRAQYEQVAG  60
RSINQSQVQA AATIQDLPGL PAGVKFDPTD QELIEHLEGK ARPDARGKLH PLVDEFIPTI  120
EGENGICYTH PERLPGVGKD GLIRHFFHRP SKAYTTGTRK RRKVHTDEEG GETRWHKTGK  180
TRPVFSNGKL KGYKKILVLY TNYGKQRKPE KTNWVMHQYH LGSDEEEKDG ELVVSKVFYQ  240
TQPRQCGGGS MSTAAKDAVP LAAPGAAGAT DQHQHDGNSS MLIKEAGIVD FYSPAALIGY  300
NQAAPNSRAA ASAHLPNFEV HTAGAAGFGP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1027940.0AK102794.1 Oryza sativa Japonica Group cDNA clone:J033108B03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969491.10.0NAC domain-containing protein 73
SwissprotO494591e-121NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2T7DIP10.0A0A2T7DIP1_9POAL; Uncharacterized protein
STRINGSi002301m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-119NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]