PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g03880.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 343aa    MW: 37238.6 Da    PI: 6.1768
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g03880.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY672.9e-21145207259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S..SSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa..edpkvveitYegeHnhe 59 
                                   +Dgy+WrKYG K+++g++f+rsY+rCt++   gC ++k v++++  +d+ ++++tY+++H+++
  Zjn_sc00028.1.g03880.1.am.mk 145 EDGYEWRKYGEKSINGTHFTRSYFRCTYKgdkGCLATKYVQQQNdsSDTPMFKVTYNNDHTCN 207
                                   8***************************99999*******9875226899***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.57E-20138208IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.9E-22139207IPR003657WRKY domain
SMARTSM007743.5E-29144208IPR003657WRKY domain
PROSITE profilePS5081116.8145209IPR003657WRKY domain
PfamPF031061.9E-22145206IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAWLPDYLEP AVREVAHVSE LIKTHQPLLL LHLQGQTAQP LAQSLLGEAL RALHLALSAM  60
TVMQQQQQQR LQIGSSSSSS SAAASLVLVV KPEPPPQLSS SPSPASELPA DSKGSARSGK  120
RRRPVANEGG GKTKSWAILT TVPHEDGYEW RKYGEKSING THFTRSYFRC TYKGDKGCLA  180
TKYVQQQNDS SDTPMFKVTY NNDHTCNCTA GSPSSAKNNI NNIPVAGGAA ASNYPPTGGH  240
HDFMVTEQEI TAVVPPPLAD GSAGVRLDEQ MPCAHQERLA ITDRYDVTVG AVGESSRLPG  300
VSSNELDRQI VTEPMMGDYD QELQDDLELL FLRDNFCYRS TTG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805829.14e-62WRKY transcription factor 55-like
STRINGSb05g001170.18e-57(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.18e-18WRKY DNA-binding protein 54