PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g03840.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 532aa    MW: 58864.9 Da    PI: 5.1739
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g03840.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY68.31.1e-21124188358
                                   -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST......TEEEEEEES--SS CS
                          WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp......kvveitYegeHnh 58 
                                   Dgy+WrKYGqK+++g+ +prsYYrCt +   gCp+k+ v+r+++ +         +++Y  eH++
  Zjn_sc00028.1.g03840.1.am.mk 124 DGYQWRKYGQKQIEGAMYPRSYYRCTRSaeqGCPAKRTVQRNEDAGgpvtssPKYTVVYMAEHTC 188
                                   9*************************988889*********996541111113456888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-22108189IPR003657WRKY domain
SuperFamilySSF1182903.14E-20117189IPR003657WRKY domain
SMARTSM007742.0E-28122190IPR003657WRKY domain
PROSITE profilePS5081118.693124165IPR003657WRKY domain
PfamPF031061.6E-23124188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MTTLGRELEL VAQLRELLSP NRSNGAWPSS TETGKLTLDD ELSVKVESGG LPPDASRDST  60
RAAEAACSGR RRRHGTKRAR NKDEQVETQQ PPGTCSKRRW IDLERCRKKQ QQSTWLVTSV  120
PDFDGYQWRK YGQKQIEGAM YPRSYYRCTR SAEQGCPAKR TVQRNEDAGG PVTSSPKYTV  180
VYMAEHTCAA NDDGSMLEAP PVILETAAVV PPATKNIAGA HAESPASSVD DATWSGTANN  240
NNSNDVVDNL LYDDGLFALD DRWAEMSSAL VHGQDMDDFI TGPIRSPVHV AAGSCWTVDQ  300
QYLLQLVNDE PVSHFSAAGA GLAMPMPSHP GKISFLLRHS CSLQGIESAA IARQYHVPNS  360
SRMCGLPTCL PPACYDPSRI VCDHRSVMKE IAREQSLVTQ LRAIVLPALQ ADERSELVVH  420
MFQNILDCSS KAMAELHLLQ KSDDSPAEDT PLVDDKKRIR RIPDDFNKDE DVMLHHKNKR  480
SDQQMSQDGN EPINNYADLV AENYMYEAFD MTAFAPLELE SWDLAVLLGF GP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-121241881068OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586209e-54KU058620.1 UNVERIFIED: Panicum miliaceum WRKY3-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0A9HC422e-82A0A0A9HC42_ARUDO; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.16e-16WRKY DNA-binding protein 70