PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g02150.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 799aa    MW: 87958.5 Da    PI: 10.8028
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g02150.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B391.27.9e-29559651186
                                   EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                   f+k ltpsdv+k++rlv+pk++ae++      g   e++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L+
  Zjn_sc00028.1.g02150.1.am.mk 559 FEKPLTPSDVGKLNRLVIPKQHAERYfplgggGDAGEKGLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLD 639
                                   99****************************98444557889**************************************** PP

                                   TT-EEEEEE-.S CS
                            B3  76 egDfvvFkld.g 86 
                                   +gD+v F+++ g
  Zjn_sc00028.1.g02150.1.am.mk 640 AGDVVRFERVrG 651
                                   ********6633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-38553671IPR015300DNA-binding pseudobarrel domain
CDDcd100171.38E-26558654No hitNo description
SuperFamilySSF1019363.14E-28558652IPR015300DNA-binding pseudobarrel domain
PfamPF023626.0E-26559664IPR003340B3 DNA binding domain
PROSITE profilePS5086313.916559667IPR003340B3 DNA binding domain
SMARTSM010191.0E-23559666IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MAGDVILLLP VRGRTTFRCA CHLTSRGRSI CEWWARIIRA RVVTCPPHDS TGTAVPCQGG  60
GAEPLGTARR RVGLLGSNVF AGDGTGKGNV CGGPAQTGAG RTRKSYRGGD RATTPKLEQN  120
RSWQARYRSA SDGEEGPVDH ELASAATDAA RRQVAKRTPS FHNCSAGRGA SELRRLCSCS  180
VPTTWRRRCP PPRFDLIVPR VRARAAGKVG WWRRGTNEPL ALLLVPRCRS TLRMSLRQPP  240
LRARMHEQGT PVRWTDRQTS PVPPCSAVQG TPFRVSPTAG ERASTKKMRD LLKRSRAKPG  300
NTYVAARGKQ GSPEPQEHQK PRRHYHVSPP PSRSRPPQYS IPSTIPDRPC EWTGKLNRTP  360
SPVIRGQVSS MIAAFVRQPV PGPSDAGKRE EPNNPWAFVA ARERQCVCGG TPRGQGRQSV  420
TSDRFATTQA AGGCRLIQRT GDSSVVLLLD QGQVAVLRRW CESRSAIRQW DRPGRALDGV  480
ESEKEEISRT TPSPSPLPLP SPRPNLLPDL DRDSSARART IMAMHPALSH GHPPAWPWGM  540
AMYTNLHYHH HQYEREQLFE KPLTPSDVGK LNRLVIPKQH AERYFPLGGG GDAGEKGLLL  600
SFEDEAGKPW RFRYSYWTSS QSYVLTKGWS RYVKEKRLDA GDVVRFERVR GGLRGGDRLF  660
IGCRRRGESA PSAPAPAPPQ PVRAPPPAVN GGEQQSWSPM CYSTSGSSYP ASPASSYAYH  720
SDMPHAGETT ETKSSGAASA PSRKLRLFGV NLDCGPEPEP EPETPTAMYG YMHQQSPYTA  780
EQFIGRKKRK RSEAMLAES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-445546663113B3 domain-containing transcription factor NGA1
5os9_B2e-445546663113B3 domain-containing transcription factor NGA1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1785790RKKRKR
2786791KKRKRS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.29e-44B3 family protein