PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00028.1.g01570.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 326aa    MW: 34483.9 Da    PI: 6.3516
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00028.1.g01570.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.22.7e-20147196255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a++aa+++++g
  Zjn_sc00028.1.g01570.1.sm.mkhc 147 RYRGVRRRP-WGKWAAEIRDP-----HraARVWLGTFDTAEAAARAYDAAALRFRG 196
                                     7********.**********7.....338************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103226.318147204IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-22147206IPR016177DNA-binding domain
PfamPF008475.2E-14147196IPR001471AP2/ERF domain
SMARTSM003803.9E-35147210IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.7E-32147206IPR001471AP2/ERF domain
PRINTSPR003679.9E-12148159IPR001471AP2/ERF domain
CDDcd000186.67E-14155206No hitNo description
PRINTSPR003679.9E-12170186IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MCDAAVEDPG EQRHRLLAAG EDPVMSLSPP ALSRSRQAQE MSAMVSALAR VVAGSAPPAA  60
TSAAPVSAEE APWWPWEELD DAPPSALVLN AHGAARQPHE QHWPPAPPAA AAGASSSWQH  120
RVSTKEELLS PPSGGSGAGS SAPRSRRYRG VRRRPWGKWA AEIRDPHRAA RVWLGTFDTA  180
EAAARAYDAA ALRFRGTRAK LNFPESATLP SSPPTPQQQH LPPAASRTLP PPSRPEALLE  240
SHSQQQALPG AEAGDYAEYA RFLQDAGDGE PGGSSSTSLS VSPAPFSFGA EREGGGSGSH  300
DPATSPSAHW YGGTYPQWRW GWDQAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-21134211479Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3549119e-62AK354911.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1013E04.
GenBankAK3630789e-62AK363078.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2012J04.
GenBankAK3658349e-62AK365834.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038B24.
GenBankAK3658789e-62AK365878.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2038I11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808413.13e-73ethylene-responsive transcription factor ABR1-like
TrEMBLA0A2T7E5K02e-79A0A2T7E5K0_9POAL; Uncharacterized protein
STRINGPavir.Cb02005.1.p4e-53(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98942540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.13e-19ethylene response factor 110