PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00028.1.g00080.1.cf.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 742aa MW: 84206.6 Da PI: 6.7449

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00028.1.g00080.1.cf.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.9	1.7e-23	86	176	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngei.tkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkw 76 +fYneYA+ +GF r+ +s++sk ++e+ ++++fvCs+eg ++++ + + +++r+r++ r gC+a+++v +e +++w Zjn_sc00028.1.g00080.1.cf.mkhc 86 EFYNEYARWLGFPFRVGRSRRSKGTEEVlVMKRFVCSREGMYKKKQPSsdDATRKRERVSMRDGCNAMMEVVRE-SDHW 163 6*******************8777652789****98887766557888999***********99.9* PP FAR1 77 evtkleleHnHel 89 +v+kle+ HnH l Zjn_sc00028.1.g00080.1.cf.mkhc 164 VVSKLEKAHNHGL 176 ***********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	7.0E-21	86	176	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-27	269	360	IPR018289	MULE transposase domain
Pfam	PF04434	2.7E-9	536	581	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	11.35	548	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0026	559	586	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 742 aa Download sequence Send to blast
MIMEGARSEG DELIADYVDC LMSLDTSARS HQNDSIVLGD SIVEGAPSLS VGGAAEPEVM 60 KDFALGDDPN EPVLGMVFES DEAAKEFYNE YARWLGFPFR VGRSRRSKGT EEVLVMKRFV 120 CSREGMYKKK QPSSDDATRK RERVSMRDGC NAMMEVVRES DHWVVSKLEK AHNHGLGTCT 180 KVGYLRARGL LVSSEKVTMV GPDDMSFLRH NVLGEGGDAQ GLLDYLKKMQ ANYPAFFHAI 240 QVDKNGCVVN AFWADARAKA AYRHFGDAVT FDTTYKKNKY MMPFVTFTGV NHHLQPVIFG 300 CALLMEETEF SFLWLFEIWL AAMGGKAPCS LVTDQNRAIK AAVGKVFPNS CHRFCKWNIL 360 SRTKQKLSNV YTEHPNLRDE LESCVLVSQT ISTFETTWMS IIDKYDLRKN SWLQTIYNIR 420 QKWVPLYLTD SFFADISPTL KLETMNDFYK KYFNTKVTFE VFLTQFDLSM ASRYENEAQA 480 DIDGYLDKAS TKTASLIEKQ AARTYTKAVF SKFQEEFTES LGYIIQKTKD GCISKYTITK 540 DEDPSETFYV TYNTSNKMAN CSCKYFEFSG ILCRHILGVY IIVDPRTLPL DYFLKRWTRK 600 ARDDDLIQDN RNNHDEDACP SIVSRYNVLC ADAMRCAEKG SGSETIYKAA KNILQKAYEE 660 IIAYERNSGR EPQRDAININ EDVTMHDAMN DQYISNSGRK VTNGPDQLLS SSCTIKGHTN 720 AISWHLVRGF LGSHLLPFLS GG

Sequence ? help Back to Top

Protein Sequence Length: 742 aa Download sequence Send to blast

MIMEGARSEG DELIADYVDC LMSLDTSARS HQNDSIVLGD SIVEGAPSLS VGGAAEPEVM  60
KDFALGDDPN EPVLGMVFES DEAAKEFYNE YARWLGFPFR VGRSRRSKGT EEVLVMKRFV  120
CSREGMYKKK QPSSDDATRK RERVSMRDGC NAMMEVVRES DHWVVSKLEK AHNHGLGTCT  180
KVGYLRARGL LVSSEKVTMV GPDDMSFLRH NVLGEGGDAQ GLLDYLKKMQ ANYPAFFHAI  240
QVDKNGCVVN AFWADARAKA AYRHFGDAVT FDTTYKKNKY MMPFVTFTGV NHHLQPVIFG  300
CALLMEETEF SFLWLFEIWL AAMGGKAPCS LVTDQNRAIK AAVGKVFPNS CHRFCKWNIL  360
SRTKQKLSNV YTEHPNLRDE LESCVLVSQT ISTFETTWMS IIDKYDLRKN SWLQTIYNIR  420
QKWVPLYLTD SFFADISPTL KLETMNDFYK KYFNTKVTFE VFLTQFDLSM ASRYENEAQA  480
DIDGYLDKAS TKTASLIEKQ AARTYTKAVF SKFQEEFTES LGYIIQKTKD GCISKYTITK  540
DEDPSETFYV TYNTSNKMAN CSCKYFEFSG ILCRHILGVY IIVDPRTLPL DYFLKRWTRK  600
ARDDDLIQDN RNNHDEDACP SIVSRYNVLC ADAMRCAEKG SGSETIYKAA KNILQKAYEE  660
IIAYERNSGR EPQRDAININ EDVTMHDAMN DQYISNSGRK VTNGPDQLLS SSCTIKGHTN  720
AISWHLVRGF LGSHLLPFLS GG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012700148.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_012700149.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_012700150.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2T7E679	0.0	A0A2T7E679_9POAL; Uncharacterized protein
STRING	Pavir.J33683.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-151	FAR1-related sequence 5