PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zjn_sc00027.1.g06780.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 249aa MW: 27357.2 Da PI: 6.1711

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00027.1.g06780.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	62.6	7.1e-20	132	194	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST....T---EEEEEE.-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa....gCpvkkkver.saedpkvveitYegeHnhe 59 +Dg++WrKYG K++ + +++r YY+C + +Cp+kk v++ s+++p ++++t+ +eH+++ Zjn_sc00027.1.g06780.1.sm.mk 132 NDGFSWRKYGEKKILNDPYTRMYYKCGNSdshsKCPAKKYVQQqSNSEPPLFTVTFINEHTCS 194 7***********************6544455****872567999*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	8.0E-22	118	194	IPR003657	WRKY domain
PROSITE profile	PS50811	15.847	126	196	IPR003657	WRKY domain
SuperFamily	SSF118290	1.96E-19	127	194	IPR003657	WRKY domain
SMART	SM00774	1.7E-23	131	195	IPR003657	WRKY domain
Pfam	PF03106	3.8E-21	132	193	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MPKSEGMSPS SSQPPSNWRK AAIQELSRGT ELAARLRQQV ELIPELDRRE AVVANVSEIS 60 EAMEASLSIL QSESEHSSSE ALQAGCAAYS SDGGSEPRHG AAARGRKVKH RRGRLGEEST 120 VIKEIQTDSP DNDGFSWRKY GEKKILNDPY TRMYYKCGNS DSHSKCPAKK YVQQQSNSEP 180 PLFTVTFINE HTCSTAFPDE PSSSSDSSHV IDFTKPSSLS PPLMEGATGP GVKQEEEAMT 240 SVFAHRWAY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808777.1	1e-80	probable WRKY transcription factor 62
TrEMBL	A0A2T7ECG8	1e-79	A0A2T7ECG8_9POAL; Uncharacterized protein
STRING	Si022933m	2e-75	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9993	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	2e-17	WRKY DNA-binding protein 55