PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00027.1.g06770.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 285aa    MW: 31835.6 Da    PI: 4.5191
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00027.1.g06770.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.12.8e-26102163159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                     ++Dg++WrKYGqKe+++s+fpr Y+rCt++   gC ++++v++s+ dp++  itY geH+++
  Zjn_sc00027.1.g06770.1.sm.mkhc 102 MEDGHAWRKYGQKEIRDSKFPRLYFRCTYKedrGCLARRRVQQSDADPSLYLITYFGEHTCS 163
                                     58***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-2596163IPR003657WRKY domain
PROSITE profilePS5081120.71397165IPR003657WRKY domain
SuperFamilySSF1182902.35E-2498164IPR003657WRKY domain
SMARTSM007746.8E-38102164IPR003657WRKY domain
PfamPF031068.3E-25103162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MATKPASAAS ELIAKGRDST AVLQAILGQQ PAAVAEMPDG IWELTEQIIR CCDRALAALQ  60
EGAASGAKKR EPEEHVMDAP RSKRMRVSDG ERGITVEKKW TMEDGHAWRK YGQKEIRDSK  120
FPRLYFRCTY KEDRGCLARR RVQQSDADPS LYLITYFGEH TCSCSRDTDE PPAPLVINFS  180
SGRTRDGQLP SGCSPWPSCD DDGLVVSETS SEICGLSEGD DLRPDKDNVA EQREHSTPVP  240
PPKPEGMSLP EWEPLDGFLD WELWDDKISF DFGEYISCDY LGLLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22102162868OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809070.15e-84probable WRKY transcription factor 70
TrEMBLA0A2T7ECG05e-85A0A2T7ECG0_9POAL; Uncharacterized protein
STRINGPavir.J07662.1.p2e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46632667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-24WRKY DNA-binding protein 70