PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00027.1.g06520.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 484aa    MW: 51577.4 Da    PI: 6.7067
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00027.1.g06520.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS291.32.7e-891114752374
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   + lL+ecA avs g+l+ a+ +L +ls++asp++ +  +Rl+ayft+A+aarl++s+ ++++ l+p  ++      + aa+
  Zjn_sc00027.1.g06520.1.sm.mk 111 IALLMECAVAVSVGNLADANGMLLELSQMASPYApSCGERLVAYFTKAMAARLMSSWVGVCAPLAPPWSA------VHAAF 185
                                   689*******************************8889***********************999887776......56789 PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeelee 160
                                   ++f+++ P+ +f++l++Nqa+lea++g++ vHi+D+d+  G  lQW++Ll aLasRp+gpp lR+Tg+g     s+ +l+ 
  Zjn_sc00027.1.g06520.1.sm.mk 186 RAFYNIAPFARFAYLACNQAVLEAFHGKRLVHIVDLDMVPGgaLQWLSLLPALASRPGGPPLLRVTGFGM----SASALRD 262
                                   99************************************988447**************************....9****** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledle.leeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvv 239
                                   tg++L+ +A++lg+pfef + vakr  d++   +   k+ gEa+aV++    h l+d  ++       +L+lv+ l+Pkv+
  Zjn_sc00027.1.g06520.1.sm.mk 263 TGNQLTGLARKLGIPFEFYA-VAKRPGDVNaAADVPSKRpGEAVAVHWLR--HALYDAAGDDGA----TLRLVRWLEPKVM 336
                                   ********************.6777777751556655556********98..888865565555....************* PP

                          GRAS 240 vvveqe......adhnsesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetle 313
                                   ++v+qe         +++ Fl+rf++al++ysalfds+ a+ p+++   r+ vE  +lgrei+nv+a  g +r  r+ +++
  Zjn_sc00027.1.g06520.1.sm.mk 337 TLVQQErgalgdGGAGHGHFLDRFVSALHHYSALFDSMGASRPADEdASRHLVEDGVLGREIMNVLAVGGPSRSGRE-KFG 416
                                   ******655433334556********************88888877699***********************88775.5** PP

                          GRAS 314 kWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                                    W+  l++ GF     + +a    +l+   ++ + gy+v ++++  v lgWk+ pL++vS W+
  Zjn_sc00027.1.g06520.1.sm.mk 417 CWQTELGRHGFLRNGGGARA----QLVAGACPaGLGYTVADDHDGTVrLGWKGTPLYTVSTWT 475
                                   ***********777766655....566666776778****88666655**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.73784457IPR005202Transcription factor GRAS
PfamPF035149.2E-87111475IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MAAGRRSDMQ DSLGLMQFHD QYLYGGSAGA ANNLPLQHHF LHHPQQGFVH GRERFTGKDH  60
VLEFAEPAAD ASEQDLAAAC TEVSGGGDDA TEERNGAAAR GEEEAHGVQM IALLMECAVA  120
VSVGNLADAN GMLLELSQMA SPYAPSCGER LVAYFTKAMA ARLMSSWVGV CAPLAPPWSA  180
VHAAFRAFYN IAPFARFAYL ACNQAVLEAF HGKRLVHIVD LDMVPGGALQ WLSLLPALAS  240
RPGGPPLLRV TGFGMSASAL RDTGNQLTGL ARKLGIPFEF YAVAKRPGDV NAAADVPSKR  300
PGEAVAVHWL RHALYDAAGD DGATLRLVRW LEPKVMTLVQ QERGALGDGG AGHGHFLDRF  360
VSALHHYSAL FDSMGASRPA DEDASRHLVE DGVLGREIMN VLAVGGPSRS GREKFGCWQT  420
ELGRHGFLRN GGGARAQLVA GACPAGLGYT VADDHDGTVR LGWKGTPLYT VSTWTWCPAS  480
HTPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-103944753379Protein SCARECROW
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806715.10.0protein SCARECROW-like
TrEMBLA0A1E5V1Z10.0A0A1E5V1Z1_9POAL; Protein SCARECROW
STRINGSi021890m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.13e-97GRAS family protein