PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00027.1.g05890.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 185aa    MW: 20257.6 Da    PI: 7.2346
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00027.1.g05890.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.8e-193988255
                           AP2  2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GVr ++ +gr++AeIrd +     r +r++lg+++t+ eAa a+++a+ +l+g
  Zjn_sc00027.1.g05890.1.sm.mk 39 HYRGVRKRP-WGRYAAEIRDpW-----RkTRVWLGTYDTPVEAALAYDRAAVALRG 88
                                  6********.**********88.....45***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.26E-273995No hitNo description
PfamPF008471.8E-123988IPR001471AP2/ERF domain
PROSITE profilePS5103221.433996IPR001471AP2/ERF domain
SMARTSM003802.0E-3139102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-293996IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-213996IPR016177DNA-binding domain
PRINTSPR003679.9E-104051IPR001471AP2/ERF domain
PRINTSPR003679.9E-106278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEWHMMGGHH RGRDSVAGAV GDAGGEEGGE QPQPLRGDHY RGVRKRPWGR YAAEIRDPWR  60
KTRVWLGTYD TPVEAALAYD RAAVALRGFK ARTNFGSASG GNCRYPPRPA APHPVQAFGG  120
LDISQPSPWH FVYLPSRLHQ AMETPEQDFV EDVAASLPST ALELRTGPGS LPFDLNEPPS  180
LLFGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-203695262ATERF1
3gcc_A7e-203695262ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1085234e-69AC108523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1118_C04, complete sequence.
GenBankAK2423934e-69AK242393.1 Oryza sativa Japonica Group cDNA, clone: J080064G22, full insert sequence.
GenBankAP0149614e-69AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126134e-69CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8288804e-69CT828880.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN038E23, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141110.15e-64uncharacterized protein LOC100273194
TrEMBLA0A1E5UZN36e-64A0A1E5UZN3_9POAL; Ethylene-responsive transcription factor 12
STRINGGRMZM2G066158_P012e-63(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.19e-23ERF domain protein 12