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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00027.1.g01810.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 309aa MW: 33816.1 Da PI: 9.1085 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.4 | 3.6e-33 | 61 | 202 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyat 70 lp+G++F+Ptd+el+ e+L+ k++ ++ + + +i+ +i++++P++Lp v+++ +fF++ +k+y+t Zjn_sc00027.1.g01810.1.am.mk 61 LPAGVKFDPTDQELL-EHLEGKARPESrklhplV---DefipTIEGEdGICYTHPEKLP-GVSKDGLVRHFFHRPSKAYTT 136 799************.99****999985665442...133334666646**********.555666688************ PP NAM 71 gkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 g+rk+r+++ + +W++tgk+++vl+ +g+ g kk+Lv+y g+++k+ekt+Wvmh+y+l Zjn_sc00027.1.g01810.1.am.mk 137 GTRKRRKVHsededggETRWHKTGKTRPVLA-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 202 ******8444555544778************.999***********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-38 | 52 | 221 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.848 | 61 | 221 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.2E-15 | 62 | 202 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MTWCNGFNDV RAAVDNPAGV VAAAGKKGAA SLAVLVKMCP SCGHRAQFAQ ETTTIQDLPG 60 LPAGVKFDPT DQELLEHLEG KARPESRKLH PLVDEFIPTI EGEDGICYTH PEKLPGVSKD 120 GLVRHFFHRP SKAYTTGTRK RRKVHSEDED GGETRWHKTG KTRPVLANGR PRGYKKILVL 180 YTNYGKQRKP EKTNWVMHQY HLGSDEEERD GELVVSKVFF QTQPRQCGST AAAAAAAKDP 240 IGDATKNNPA VNGRELAGHT VFSEPNVAEY YNPATIGYGH GVPNNRAQVV ATHFMPNFAV 300 HAGRASFAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-11 | 61 | 202 | 15 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT065544 | 0.0 | BT065544.2 Zea mays full-length cDNA clone ZM_BFb0229C22 mRNA, complete cds. | |||
GenBank | JX428532 | 0.0 | JX428532.1 Zea mays subsp. mays clone pUT3132 NAC87 NAC type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440245.1 | 1e-158 | NAC domain-containing protein 73 | ||||
Swissprot | O49459 | 1e-124 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A109PNR3 | 1e-169 | A0A109PNR3_BAMEM; NAC1 | ||||
STRING | Pavir.J04559.1.p | 1e-159 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3075 | 37 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-120 | NAC domain containing protein 73 |
Publications ? help Back to Top | |||
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