PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00027.1.g01660.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 271aa    MW: 29014.3 Da    PI: 5.8257
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00027.1.g01660.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.44.1e-19116167256
                           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr+++ +g+++AeIrd  +   k +r++lg+f taeeAa a++ a+++++g+
  Zjn_sc00027.1.g01660.1.am.mk 116 SYRGVRRRP-WGKFAAEIRDtRR---KGARVWLGTFATAEEAALAYDVAALRMRGP 167
                                   69*******.**********332...34**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.59E-29115174No hitNo description
Gene3DG3DSA:3.30.730.101.5E-31116174IPR001471AP2/ERF domain
SMARTSM003805.8E-37116180IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-23116176IPR016177DNA-binding domain
PROSITE profilePS5103223.841116174IPR001471AP2/ERF domain
PfamPF008474.9E-15116166IPR001471AP2/ERF domain
PRINTSPR003671.0E-10117128IPR001471AP2/ERF domain
PRINTSPR003671.0E-10140156IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAIGATSGSH RQQDEGTNIL ENVWASIMTG CTAIPASSST AVSSSVAGEQ KPESILQRLP  60
SLGRWISMGA EEWDELLSGT TPAPTSDHAS GEELLAASPP ANQDRGSSRA SAACKSYRGV  120
RRRPWGKFAA EIRDTRRKGA RVWLGTFATA EEAALAYDVA ALRMRGPRAH LNFPLDVVQR  180
ELAAAAGDGR AEATRVLRRK RRRTSDVAAW DAAAAATTTC SSDDQTMVSF AWGSEQGTGM  240
MKERSSSDAG GLIEFEDIGG EYWDYLFAPL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-27112177166ATERF1
3gcc_A3e-27112177166ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198202RKRRR
2198203RKRRRT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU6854127e-96KU685412.1 Saccharum spontaneum clone SES23E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806647.11e-115ethylene-responsive transcription factor 15-like
TrEMBLA0A2S3H9P91e-114A0A2S3H9P9_9POAL; Uncharacterized protein
STRINGPavir.J34156.1.p1e-112(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.19e-22ERF family protein