PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00027.1.g01590.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 413aa MW: 43347.4 Da PI: 7.5419

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00027.1.g01590.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.6	1.2e-33	197	254	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d vv++tYeg+H+h+ Zjn_sc00027.1.g01590.1.sm.mk 197 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSFQDAAVVITTYEGKHTHP 254 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.2E-35	181	256	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-29	188	256	IPR003657	WRKY domain
PROSITE profile	PS50811	31.904	191	256	IPR003657	WRKY domain
SMART	SM00774	4.3E-40	196	255	IPR003657	WRKY domain
Pfam	PF03106	1.8E-26	197	254	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MADARRVDHD GGHQRHLSGD FQFHDDLASL FAQRLEAGTP MQQQPWFTDY LQQASTLTPL 60 DFDSFAGEFD MSTAVEEVKR ELAVDGTGAA SGVGMPGGGG GTSTTAPLMQ NSMSLSSTSS 120 EACGAGGGAG AGEESPGKCK EEEGEGDESK DGSAAKGGGE MDGKNKKGAA KGKGKGEKRP 180 RQPRFAFMTK SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTTQKCPVK KRVERSFQDA 240 AVVITTYEGK HTHPIPPTLR GSARLLAAEH HPGLHHPHFR MPPPPPRPMG GAAGFAYGRP 300 GATALDALGL LQPRPQGHHH AIQVQQLVSG AGGGVQPQVN AAMASSHVGH VALDQLGGLA 360 AIAGTAGTAP ATTAAASVST APLRVQHFMA QDYAGLLQDM LPPFIQSDGG NNP

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MADARRVDHD GGHQRHLSGD FQFHDDLASL FAQRLEAGTP MQQQPWFTDY LQQASTLTPL  60
DFDSFAGEFD MSTAVEEVKR ELAVDGTGAA SGVGMPGGGG GTSTTAPLMQ NSMSLSSTSS  120
EACGAGGGAG AGEESPGKCK EEEGEGDESK DGSAAKGGGE MDGKNKKGAA KGKGKGEKRP  180
RQPRFAFMTK SEVDHLEDGY RWRKYGQKAV KNSPFPRSYY RCTTQKCPVK KRVERSFQDA  240
AVVITTYEGK HTHPIPPTLR GSARLLAAEH HPGLHHPHFR MPPPPPRPMG GAAGFAYGRP  300
GATALDALGL LQPRPQGHHH AIQVQQLVSG AGGGVQPQVN AAMASSHVGH VALDQLGGLA  360
AIAGTAGTAP ATTAAASVST APLRVQHFMA QDYAGLLQDM LPPFIQSDGG NNP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-26	184	257	2	75	WRKY transcription factor 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004961203.1	1e-123	probable WRKY transcription factor 28
TrEMBL	A0A1E5VKW3	1e-134	A0A1E5VKW3_9POAL; Putative WRKY transcription factor 71
STRING	Si022220m	1e-123	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	4e-49	WRKY DNA-binding protein 71