PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00027.1.g01240.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 373aa    MW: 40788.9 Da    PI: 10.6193
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00027.1.g01240.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-19101151256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ +l+ge
  Zjn_sc00027.1.g01240.1.am.mk 101 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAHRLRGE 151
                                   59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.93E-26100158No hitNo description
SMARTSM003801.1E-31101164IPR001471AP2/ERF domain
PROSITE profilePS5103222.695101158IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21101158IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-29101158IPR001471AP2/ERF domain
PRINTSPR003673.4E-9102113IPR001471AP2/ERF domain
PfamPF008475.9E-13102151IPR001471AP2/ERF domain
PRINTSPR003673.4E-9124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDASLRTLPP GSSFPGEVRS AVSSLLLSPG GASALDTVFS HLPPPVAIPP LGSSVYYRQC  60
ELLRHFAASQ PHPTTACSSS SSSAATFQPT GDETALRGQK LYRGVRQRQW GKWVAEIRLP  120
QNRVRVWLGT YDSPETAAHA YDRAAHRLRG EYARLNFPGV MDGRDCPENL RQLRDAVDAK  180
IRAIRARLAR KRARARKQRG EQGKQLPAPT AARPVLSEGA TTTSETTTTT PYGSPDGVLS  240
VSAASADGEL PLEHMPSFDP ELIWEPEGQS RAEDPGNRGK ISRASLGAAE RTNATRALAR  300
DGYSFLLRVT VQQMEGVPPP PPPASSSPSH PSPLPRTKNN WQRRLWIKPT RRDIAAYASA  360
IWLDAERERV TRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-17100158463ATERF1
3gcc_A3e-17100158463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1188194ARKRARA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389881e-116BT038988.1 Zea mays full-length cDNA clone ZM_BFb0347O12 mRNA, complete cds.
GenBankKJ7275021e-116KJ727502.1 Zea mays clone pUT5361 AP2-EREBP transcription factor (EREB34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808129.11e-112ethylene-responsive transcription factor ERF061
TrEMBLA0A0M4L9611e-112A0A0M4L961_9POAL; DREB2A
STRINGORGLA03G0412600.11e-112(Oryza glaberrima)
STRINGORGLA05G0229700.11e-112(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.13e-29ERF family protein