PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00027.1.g00590.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 302aa    MW: 32588.3 Da    PI: 5.2709
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00027.1.g00590.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.81.6e-26138196259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                    D ++WrKYGqK++kgs++pr+YY+C+s   C ++k ver+ e p+v+++tY  eH h 
  Zjn_sc00027.1.g00590.1.am.mk 138 TDLWAWRKYGQKPIKGSPYPRGYYKCSSLkACLARKLVERNPEKPEVLTVTYIAEHCHA 196
                                   699************************9989*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.242132198IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-26133198IPR003657WRKY domain
SuperFamilySSF1182907.45E-23135198IPR003657WRKY domain
SMARTSM007747.4E-30137197IPR003657WRKY domain
PfamPF031061.1E-21139195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MEPLNDWDLQ AVVRSCGTAA CSSSSAAVES LHKEAARSMV EAGSESFLGQ PAATLRDLDS  60
LNLDHELPFS ITPASDGRAN DGQEVPISSP AESASGQSRK KAGRRKPGVR APRPKRSKKS  120
QLKKVVCEVP VADGGVSTDL WAWRKYGQKP IKGSPYPRGY YKCSSLKACL ARKLVERNPE  180
KPEVLTVTYI AEHCHAVPTM LNSVAGTTRN RPPSPVPDHR SQSDEPSATN NRREDSADAS  240
SITADGGSAG TPDDENVDLW PVDMSLLDEY PLDDLLGPFA DGVDLCLEDV DERDGFGRRM  300
SL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B5e-17119199280Disease resistance protein RRS1
5w3x_D5e-17119199280Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809273.11e-115WRKY transcription factor 22-like
TrEMBLA0A3L6SXR11e-124A0A3L6SXR1_PANMI; WRKY transcription factor 22-like
STRINGPavir.J29891.1.p1e-115(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42793070
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-39WRKY family protein