PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00024.1.g01570.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 320aa    MW: 34209.6 Da    PI: 9.1431
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00024.1.g01570.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.4e-11127174454
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                    h+e+ErrRR+riN  +++Lr+++  +   +sk ++Ka+ L  A+  +k+L
  Zjn_sc00024.1.g01570.1.am.mk 127 VHSEAERRRRERINAHLATLRRVMVVP---DSKQMDKATLLATAISQLKDL 174
                                   59*************************...9999***********999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.649123174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-13126200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.2E-9127174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-11127183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-9129180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.79E-5221277No hitNo description
CDDcd048736.80E-7221284No hitNo description
Gene3DG3DSA:3.30.70.2602.8E-4221276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MWTYATVAVA LALVRRAPPT EGDDDESLQF AFAIEGDGGL GRGQMSAPSC RPFQTGAQQR  60
EQRHTPAPLQ QHGVVRGRLP SSVYRGAATA LQQAISTSAP APAALQERSL SSSSSGRSAA  120
EERALKVHSE AERRRRERIN AHLATLRRVM VVPDSKQMDK ATLLATAISQ LKDLRRKASE  180
ITHPPPLVPA EADSVTVHCH PHPDAGAGDD NRATLYVHAC VSCDDRPGLL ADIATAVHAL  240
RLRPLRADVS SLGGRTRCSF VLCTEGGDGN MVTRSLEEDV RQVLAGAAFA EMARGCGGGS  300
TSKRQRVLEP RALYSGGMNR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131136ERRRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978282.17e-67transcription factor bHLH51
TrEMBLA0A1E5W3S12e-67A0A1E5W3S1_9POAL; Uncharacterized protein
STRINGPavir.J32610.1.p1e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.15e-23basic helix-loop-helix 32