PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00023.1.g05810.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 413aa MW: 44752.1 Da PI: 6.5092

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00023.1.g05810.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	34	6.3e-11	266	291	1	26
G2-like 1 kprlrWtpeLHerFveaveqLGGsek 26 k+r+rWt++LHe Fv++v++LGG+++ Zjn_sc00023.1.g05810.1.sm.mkhc 266 KTRIRWTQDLHELFVDCVNKLGGADR 291 68*********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.2E-8	265	295	IPR009057	Homeodomain-like
Pfam	PF14379	5.2E-20	312	357	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MQSERENCQE VSVLPAAYSQ VFRDPVITAM NTKKIKLHDH HSYGSQMCDP HLFQATAAGF 60 NFHQGFVSSG HSVPQQNGGG GGNWPQEEYI SQTPRSALAT QGVCVGSDPA SFFAAENLIG 120 MARFDCALPP MAGLRTAPFG RAPEADQLHR SVDPPLLRDD SVRTYYVPPQ QRDAATAHPA 180 LELPLQQQGL FGHASAARLL GGEPQNHPFS PHVAASTLLP AMAGPSVTSP MDRENALSRS 240 CSTGAPTTRT GNMVTATTPG QGAPSKTRIR WTQDLHELFV DCVNKLGGAD RKHEKRAAGN 300 DVLNLDPNTG EQITQALRVQ LDVQRRLHEQ LEIQRNLQLK IEEQGKKLQK MFEEQLKASK 360 SVLEPPRENR QDAGAASAVL GEDDDAFDDV QLLSVASSGF NDAGFPSKIK LPS

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MQSERENCQE VSVLPAAYSQ VFRDPVITAM NTKKIKLHDH HSYGSQMCDP HLFQATAAGF  60
NFHQGFVSSG HSVPQQNGGG GGNWPQEEYI SQTPRSALAT QGVCVGSDPA SFFAAENLIG  120
MARFDCALPP MAGLRTAPFG RAPEADQLHR SVDPPLLRDD SVRTYYVPPQ QRDAATAHPA  180
LELPLQQQGL FGHASAARLL GGEPQNHPFS PHVAASTLLP AMAGPSVTSP MDRENALSRS  240
CSTGAPTTRT GNMVTATTPG QGAPSKTRIR WTQDLHELFV DCVNKLGGAD RKHEKRAAGN  300
DVLNLDPNTG EQITQALRVQ LDVQRRLHEQ LEIQRNLQLK IEEQGKKLQK MFEEQLKASK  360
SVLEPPRENR QDAGAASAVL GEDDDAFDDV QLLSVASSGF NDAGFPSKIK LPS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004960202.1	1e-164	uncharacterized protein LOC101784276
Refseq	XP_004960204.1	1e-164	uncharacterized protein LOC101784276
TrEMBL	K3Z6D0	1e-162	K3Z6D0_SETIT; Uncharacterized protein
STRING	Si022099m	1e-163	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6933	37	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-33	G2-like family protein