PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g05720.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 267aa    MW: 28431 Da    PI: 8.5676
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g05720.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.99.5e-203494357
                                  --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                  +R+t+t+eql++L+el++    r p+ae+++++++ l    +++ ++V++WFqN++a+e++
  Zjn_sc00023.1.g05720.1.am.mk 34 SRWTPTPEQLRILKELYYTcgVRSPTAEQIQRITAMLrqhgKIEGKNVFYWFQNHKARERQ 94
                                  7*****************7669*************************************97 PP
2Wus_type_Homeobox114.64.9e-373396365
             Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                                   +RWtPtpeQ++iL+ely+ +G+r+P++e+iqrita+L+++Gkie+kNVfyWFQN+kaRerqk+
  Zjn_sc00023.1.g05720.1.am.mk 33 GSRWTPTPEQLRILKELYYtCGVRSPTAEQIQRITAMLRQHGKIEGKNVFYWFQNHKARERQKK 96
                                  68***************9989*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.59E-122798IPR009057Homeodomain-like
PROSITE profilePS5007110.2032995IPR001356Homeobox domain
SMARTSM003892.6E-73199IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-73494IPR009057Homeodomain-like
PfamPF000461.8E-173494IPR001356Homeobox domain
CDDcd000861.31E-73596No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MQQPKQVMSA GDGVAAANAS ARSGGVSVCR PTGSRWTPTP EQLRILKELY YTCGVRSPTA  60
EQIQRITAML RQHGKIEGKN VFYWFQNHKA RERQKKRLTN LDVNVPAADA NHLGVVSLSP  120
AARATSPSST VGMYTGNGVG ASAMQLDAAV DWDNTAMVAT EGCFLQDYMG VQNTGGVHGS  180
TGAATSPWAW FSSPDQRTTT RAPETLPLFP TGDVDSCPRP WQGVDASRGG SYYLPDLQCR  240
CIAINTCALP GCGVMVWSSS GGVSAAR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2347442e-84AM234744.1 Zea mays mRNA for WUS1 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680535.12e-93WUSCHEL-related homeobox 1B
RefseqXP_025826282.11e-93WUSCHEL-related homeobox 1A-like
SwissprotQ7XM138e-64WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBLA0A3L6Q0444e-93A0A3L6Q044_PANMI; Uncharacterized protein
STRINGSi024219m8e-93(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.18e-37WOX family protein
Publications ? help Back to Top
  1. Lu Z, et al.
    MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation.
    J Genet Genomics, 2015. 42(2): p. 71-8
    [PMID:25697101]
  2. Tanaka W, et al.
    Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.
    Plant Cell, 2015. 27(4): p. 1173-84
    [PMID:25841039]
  3. Mjomba FM, et al.
    Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
    G3 (Bethesda), 2016. 6(7): p. 2013-21
    [PMID:27194802]