PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g04770.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 401aa    MW: 43113.4 Da    PI: 6.649
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g04770.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-1757106155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Zjn_sc00023.1.g04770.1.sm.mkhc  57 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 106
                                     78*******************......55************************997 PP
2AP246.68.4e-15149199155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  Zjn_sc00023.1.g04770.1.sm.mkhc 149 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 199
                                     89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.3E-957106IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-1557114IPR016177DNA-binding domain
SMARTSM003801.3E-3058120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-1758114IPR001471AP2/ERF domain
PROSITE profilePS5103217.30658114IPR001471AP2/ERF domain
PfamPF008478.5E-11149199IPR001471AP2/ERF domain
CDDcd000186.02E-26149209No hitNo description
SuperFamilySSF541711.44E-18149209IPR016177DNA-binding domain
SMARTSM003803.9E-34150213IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-17150208IPR001471AP2/ERF domain
PROSITE profilePS5103216.489150207IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MWDLNDTPAA EAVATVSPSA EDSGASSSSA AALVDVPEDA DDADAVKSRR GPRSRSSQYR  60
GVTFYRRTGR WESHIWDCGK QVYLGGFDTA HAAARAYDRA AIKFRGVEAD INFCLEDYKD  120
DMKQMGNLSK EEFIHVLRRQ STGCPRGSSK YRGVTLHKCG RWEARMGQFL GKKYVYLGLF  180
DTEEEAARAY DRAAIKCNGK DAVTNFDASV YAEEMEATSA ATGGDDEHNL DLSLGSSAGS  240
KRGSLDGVGD EESWDQRVPM AFDLDWQTAA ARSTKAKFDE NSKQAQQMPP ASQAYQHLSF  300
NPRHHHRFLS SGDPGTAGGL SLTIGGAGGG GGHWPPQPQR LPHGWGNGGG GGATTWPVMP  360
PAYPPAPGAA TAAAASSRFP PYVTTQQAPG WNGFHSLTRP T
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0561880.0BT056188.1 Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824499.11e-169AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AVJ91e-164APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A2T7D0V31e-168A0A2T7D0V3_9POAL; Uncharacterized protein
TrEMBLA0A2T8IE451e-168A0A2T8IE45_9POAL; Uncharacterized protein
STRINGSi012635m1e-166(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.23e-93AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]