PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00023.1.g04740.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 234aa    MW: 25448.4 Da    PI: 10.2829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00023.1.g04740.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.99.4e-1763112255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  Zjn_sc00023.1.g04740.1.sm.mk  63 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 112
                                   69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.2E-3062121IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-2163122IPR016177DNA-binding domain
PfamPF008472.5E-1063112IPR001471AP2/ERF domain
SMARTSM003807.9E-3663126IPR001471AP2/ERF domain
PROSITE profilePS5103222.58963120IPR001471AP2/ERF domain
PRINTSPR003676.0E-126475IPR001471AP2/ERF domain
CDDcd000186.02E-2566121No hitNo description
PRINTSPR003676.0E-12102122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MQGEYRSSSE ESAAAAAAAA AAAAAAAAMA PLAAAAAAAV KMEEQVAMAP SAQQHQQQQP  60
RRQYRGVRMR KWGKWVAEIR EPHKRTRIWL GSYATPVAAA RAYDTAVFYL RGRSARLNFP  120
DEIPALALSE GGDARDADGG TLSAASIRKK AIEVGSRVDA LQTGMMVAPP PHHRERPRHN  180
HHHHHQHPEL QLLGDEHHQH EQKPPPQQPR AARSGRAKNP DLNRAPSPES SDAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-1462123466ATERF1
3gcc_A5e-1462123466ATERF1
5wx9_A6e-14631221474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0610951e-146AK061095.1 Oryza sativa Japonica Group cDNA clone:006-207-A04, full insert sequence.
GenBankAK0993331e-146AK099333.1 Oryza sativa Japonica Group cDNA clone:J033003O11, full insert sequence.
GenBankAL6066351e-146AL606635.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0010D21, complete sequence.
GenBankAP0149601e-146AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826193.13e-83ethylene-responsive transcription factor RAP2-10-like
SwissprotO221743e-47ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A2S3IAZ37e-82A0A2S3IAZ3_9POAL; Uncharacterized protein
STRINGPavir.J27349.1.p3e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.15e-44DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]