PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00023.1.g03380.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 900aa MW: 99549.5 Da PI: 11.7487

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00023.1.g03380.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.2	1.1e-16	400	445	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+ellP++ +K +K+++L +A++Y+ksLq Zjn_sc00023.1.g03380.1.am.mk 400 HNFSERRRRDRINEKLKALQELLPNC-----TKTDKVSMLDEAIDYLKSLQ 445 9***********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.1E-18	393	452	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.56E-17	393	449	No hit	No description
PROSITE profile	PS50888	18.482	395	444	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-20	398	470	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.4E-14	400	445	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-18	401	450	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence Send to blast
MSLSGSDELD MIAATNSSPL RRPDSLTEAK QAGPDGTAAF RWMRTRVHTC SLRFVPASPY 60 PPDKLGPTDH PRAGPNVRSS IGVQLTTLTR PVASLGPALE HHSASARERR RSRDHARSPS 120 RAPSRPTTPM AETARVRPPP WRPLPTPRSF RSGARSRPPL ASGVTEPTRS PRSARPGSNT 180 RCTVAHAGCA GRQPFVEHAA GDQDAGHTRD REDAARYVAS SDRFSRHGRG GMEVTASFVP 240 FLRPGHATGA HGRASWTAPF PSGGHGVRAY LPACGAKTTT TSRRSGYFRT CSCGVKLASL 300 RVLRRAIEMH WPAWRMRLGS LAALCFAIPA VLTVPRACPF TNSEVIGLRS YTKANDFAVA 360 DDETKQETPM DGEVHQELME EVRAPRTTPP TRRSRSVEFH NFSERRRRDR INEKLKALQE 420 LLPNCTKTDK VSMLDEAIDY LKSLQLQLQM LVMGKGMAPV VPPELQQYMH YITADAAQMP 480 PPPLRPSQHP RPFQITQADP QRQSNVESDF LSQMQNLNPS EPPQNFLRPP KLQLYTPPWA 540 DSPCRHQRAS KCALRRAVPY RPAPPSRPRR RAPHTGPVPA PAPTPEPPPT XXTPGLCPHP 600 HPHLSRRPHP RRRLRGGPRV EVAAFRGGRE RRRLIEVAGT RRRWHQGGGG SSRWPASRGG 660 VRKEKDKRDG TRRERERRRW HAQMEVVPVA VPRKVIGAGN DVSPDDGRVG QRAGWIRRDA 720 LLERQQRLEL HGHGRVVRYR FRLRRQEQCQ YSYHGNGWKG WSVPSVHEEC HFIDVRLSKV 780 RLTRNCGGKD TGQLLRPVTP TGRPTCRSTG PSGGLAAWRL QAARALRVLT STCLPRAISA 840 AHVHHSVGRL SSSGPGDSGD GSKRPAGVRT RPDLCPASPS SVPPSLATGI PPSPSPSCDW

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence Send to blast

MSLSGSDELD MIAATNSSPL RRPDSLTEAK QAGPDGTAAF RWMRTRVHTC SLRFVPASPY  60
PPDKLGPTDH PRAGPNVRSS IGVQLTTLTR PVASLGPALE HHSASARERR RSRDHARSPS  120
RAPSRPTTPM AETARVRPPP WRPLPTPRSF RSGARSRPPL ASGVTEPTRS PRSARPGSNT  180
RCTVAHAGCA GRQPFVEHAA GDQDAGHTRD REDAARYVAS SDRFSRHGRG GMEVTASFVP  240
FLRPGHATGA HGRASWTAPF PSGGHGVRAY LPACGAKTTT TSRRSGYFRT CSCGVKLASL  300
RVLRRAIEMH WPAWRMRLGS LAALCFAIPA VLTVPRACPF TNSEVIGLRS YTKANDFAVA  360
DDETKQETPM DGEVHQELME EVRAPRTTPP TRRSRSVEFH NFSERRRRDR INEKLKALQE  420
LLPNCTKTDK VSMLDEAIDY LKSLQLQLQM LVMGKGMAPV VPPELQQYMH YITADAAQMP  480
PPPLRPSQHP RPFQITQADP QRQSNVESDF LSQMQNLNPS EPPQNFLRPP KLQLYTPPWA  540
DSPCRHQRAS KCALRRAVPY RPAPPSRPRR RAPHTGPVPA PAPTPEPPPT XXTPGLCPHP  600
HPHLSRRPHP RRRLRGGPRV EVAAFRGGRE RRRLIEVAGT RRRWHQGGGG SSRWPASRGG  660
VRKEKDKRDG TRRERERRRW HAQMEVVPVA VPRKVIGAGN DVSPDDGRVG QRAGWIRRDA  720
LLERQQRLEL HGHGRVVRYR FRLRRQEQCQ YSYHGNGWKG WSVPSVHEEC HFIDVRLSKV  780
RLTRNCGGKD TGQLLRPVTP TGRPTCRSTG PSGGLAAWRL QAARALRVLT STCLPRAISA  840
AHVHHSVGRL SSSGPGDSGD GSKRPAGVRT RPDLCPASPS SVPPSLATGI PPSPSPSCDW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	403	408	ERRRRD
2	661	668	RKEKDKRD

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9562	30	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.1	2e-25	phytochrome interacting factor 3-like 5